View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11243_low_1 (Length: 1133)
Name: NF11243_low_1
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11243_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 604 - 1116
Target Start/End: Complemental strand, 4284247 - 4283735
Alignment:
| Q |
604 |
aatccaaagtcaatttccatctcaaaaccctaaacccccaacttcaccaaatctcgactgtaatcactgccgctctccctgttacccaccgtcactctct |
703 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |||||| |||| ||||||||||||||| |
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| T |
4284247 |
aatccaaaatcaatttccatctcaaaaccctaaacccccaacttcaccaaatcccgacagaaatcactgccgatctccccgttaaccaccgtcactctct |
4284148 |
T |
|
| Q |
704 |
ctattcctccggccacgtttgtttcatcactcctcgaatcctcatcgtcgatcttttaacaaacaaactccctacataaacaatctccggtatattaatc |
803 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
4284147 |
ctattcctccggccacgtttgtttcatcactcctcgaatcctcatcgtcgatcttttaacaaacaaactccctacatcaacaatctccggtatgttaatc |
4284048 |
T |
|
| Q |
804 |
ctcaatgcacattcaatttccgaaacttccactgaagcgtttattgtaagaattttccgttcgtttaatcgcgatgcgtatgttagagcattttctgatc |
903 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4284047 |
ctcaatgcacattcaatttccgaaacttccaccgaagcgtttattgtaagaattttccgttcgtttaatcgcgatgcgtatgttagagcattttctgatc |
4283948 |
T |
|
| Q |
904 |
gtcctcaggcgatggtttctggttttgcgaaggcggagaggacgatgaagtgtttagggttacggaagttacatttatggccgagatttcaggtttatgt |
1003 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4283947 |
gtcctcaggcgatggtttctggttttgcgaaggcggagaggacgatgaagtgtttagggttacggaagttacatttatggccgagatttcaggtttatgt |
4283848 |
T |
|
| Q |
1004 |
gagtcaagagcttgagagggatccaccggatgtggtcgatattagggttccgatgacgaagtatatgttggggattcagaaagcgattgtcgaggttatg |
1103 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
4283847 |
gagtcaagagcttgagagggatccaccggatgtggtggatattagggttccgatgacgaagtatatggtggggattcagaaagctattgtcgaggttatg |
4283748 |
T |
|
| Q |
1104 |
gatgcgtgtttga |
1116 |
Q |
| |
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||||||||||||| |
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| T |
4283747 |
gatgcgtgtttga |
4283735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 175 - 498
Target Start/End: Complemental strand, 4284670 - 4284353
Alignment:
| Q |
175 |
tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag |
274 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
4284670 |
tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag |
4284576 |
T |
|
| Q |
275 |
tttcgcagttcacattttcgcggttcactggttttacagttgaaacttggaatgcttcattccttcgagaatttgcagttccaaacctaaannnnnnnct |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
4284575 |
tttcgcagttcacattttcgcggttcactggttttgcagttgaaacttggaatgcttcattccttcgagaatttgcagttcaaaacctaaa-ttttttct |
4284477 |
T |
|
| Q |
375 |
cagtaacaatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctag |
474 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4284476 |
cagtaataatcaaatcaaattcgaacttcttcaatttgcatccattattattcatcaatggttcttcaattccacgaacacataatcacagagcttctag |
4284377 |
T |
|
| Q |
475 |
aagacaccaatggcggtctcacaa |
498 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
4284376 |
aagacaccaatggcggcctcacaa |
4284353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 3e-79
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 4286335 - 4286173
Alignment:
| Q |
1 |
ttttgctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagttcaatatacc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4286335 |
ttttgctaaggttatgccatgatgggccaagggaatgataacagagtcttgtcttaaatgaagagttagcttacttaattatcctcaagttcaatatacc |
4286236 |
T |
|
| Q |
101 |
cagattgatttttatcaaaaaacttgaatgctctatggaggtgtatattattctcagacgaat |
163 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
4286235 |
gagattgatttttatcaaaaaacttgaatgctctatggaggtgtatatcattctcagatgaat |
4286173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 694 - 771
Target Start/End: Complemental strand, 23428615 - 23428538
Alignment:
| Q |
694 |
gtcactctctctattcctccggccacgtttgtttcatcactcctcgaatcctcatcgtcgatcttttaacaaacaaac |
771 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||||||||| ||||| | || ||||||||||||| |||||||| |||| |
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| T |
23428615 |
gtcactctttctactcctccgaccacgtttgtttcatcattcctcaagtcttcatcgtcgatctgttaacaaataaac |
23428538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 430 - 486
Target Start/End: Complemental strand, 23429478 - 23429422
Alignment:
| Q |
430 |
caatggttcttcaattccacgaacacataatcacagagcttctagaagacaccaatg |
486 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |
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| T |
23429478 |
caatggttcttcaattccacacaaacataatcacttaacttctagaagacaccaatg |
23429422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 21387149 - 21387211
Alignment:
| Q |
82 |
tcctcaagttcaatatacccagattgatttttatcaaaaaacttgaatgctctatggaggtgt |
144 |
Q |
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|
||||||||||||||| ||||||||| |||||||||||||| | ||||||||| ||||||||| |
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| T |
21387149 |
tcctcaagttcaataaacccagattcgtttttatcaaaaaattggaatgctctttggaggtgt |
21387211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 689 - 741
Target Start/End: Original strand, 25978336 - 25978388
Alignment:
| Q |
689 |
ccaccgtcactctctctattcctccggccacgtttgtttcatcactcctcgaa |
741 |
Q |
| |
|
||||| || |||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
25978336 |
ccaccatcgctctctatattcctccggccacatttgtttcatcactcctcgaa |
25978388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 689 - 738
Target Start/End: Complemental strand, 4039800 - 4039751
Alignment:
| Q |
689 |
ccaccgtcactctctctattcctccggccacgtttgtttcatcactcctc |
738 |
Q |
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||||| || |||||| ||||||||||||||| ||||||| |||||||||| |
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| T |
4039800 |
ccaccatcgctctctttattcctccggccacatttgtttgatcactcctc |
4039751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 689 - 741
Target Start/End: Complemental strand, 16999870 - 16999818
Alignment:
| Q |
689 |
ccaccgtcactctctctattcctccggccacgtttgtttcatcactcctcgaa |
741 |
Q |
| |
|
||||| || |||||| ||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
16999870 |
ccaccatcgctctctatattcctccggccacatttgttttatcactcctcgaa |
16999818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 604 - 644
Target Start/End: Complemental strand, 8682320 - 8682280
Alignment:
| Q |
604 |
aatccaaagtcaatttccatctcaaaaccctaaacccccaa |
644 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |||| |
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| T |
8682320 |
aatccaaaatcaatttccatctcaaaaccctaaaccaccaa |
8682280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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