View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11243_low_2 (Length: 543)

Name: NF11243_low_2
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11243_low_2
NF11243_low_2
[»] chr4 (15 HSPs)
chr4 (16-526)||(46428119-46428624)
chr4 (205-458)||(46015825-46016078)
chr4 (258-503)||(46027825-46028069)
chr4 (52-389)||(46020784-46021109)
chr4 (257-386)||(46015351-46015479)
chr4 (258-386)||(46020583-46020710)
chr4 (258-450)||(46303777-46303970)
chr4 (258-441)||(46021197-46021381)
chr4 (258-386)||(46246223-46246350)
chr4 (56-120)||(46015607-46015672)
chr4 (264-356)||(41074446-41074537)
chr4 (424-458)||(46028345-46028379)
chr4 (56-122)||(46304065-46304130)
chr4 (267-359)||(14320585-14320676)
chr4 (267-359)||(14321753-14321844)
[»] chr8 (4 HSPs)
chr8 (258-364)||(4522907-4523012)
chr8 (258-384)||(4525280-4525403)
chr8 (63-123)||(4525565-4525626)
chr8 (61-126)||(4522771-4522837)
[»] chr1 (9 HSPs)
chr1 (258-459)||(3802180-3802384)
chr1 (258-395)||(3802619-3802752)
chr1 (304-419)||(3801740-3801857)
chr1 (335-436)||(3804128-3804229)
chr1 (205-359)||(50668519-50668681)
chr1 (263-375)||(50668040-50668152)
chr1 (402-458)||(3803594-3803650)
chr1 (390-437)||(50669223-50669270)
chr1 (70-126)||(50667472-50667529)
[»] chr3 (1 HSPs)
chr3 (278-357)||(52806350-52806429)
[»] scaffold0384 (1 HSPs)
scaffold0384 (275-361)||(5721-5806)
[»] scaffold0079 (1 HSPs)
scaffold0079 (289-361)||(7947-8018)


Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Complemental strand, 46428624 - 46428119
Alignment:
Q  16 acatcaaaagaggagtctgctggtaatttccacgaagcttcttaccaaattctgtttaatgttttgatcaattaagaaatgaagggtgaggttattttaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428624 acatcaaaagaggagtctgctggtaatttccacgaagcttcttaccaaattctgtttaatgttttgatcaattaagaaatgaagggtgaggttattttaa 46428525  T
Q  116 tatggctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagccacagaaaaatagaagacatgcataggaaaaaatagaatgaaatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428524 tatggctgaaactgttaaagagaaaaggagaagaaaaaagacaacgcacaacagccacagaaaaatagaagacatgcataggaaaaaatagaatgaaatg 46428425  T
Q  216 ggttgaatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatca---agaacttgcattttcataaaaacaggaaagca 312  Q
    || ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||   ||||||||||||||||||||||||||||||||    
T  46428424 ggctgaatttcccaagcctggcaacaatggcaagataaacacatgtc--------cactcaatcaattagaacttgcattttcataaaaacaggaaagca 46428333  T
Q  313 aaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428332 aaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacat 46428233  T
Q  413 atcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgccccctactttttgtttcttaacaacatcattcttgcttgtcata 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  46428232 atcaatataccattacagcattgagtaaaacttactttctccttttcgctctgtgccccctattttttgtttattaacaacatcattcttgcttgtcata 46428133  T
Q  513 taaggctctcgctc 526  Q
    ||||||||||||||    
T  46428132 taaggctctcgctc 46428119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 205 - 458
Target Start/End: Complemental strand, 46016078 - 46015825
Alignment:
Q  205 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacacatgtccatattaacactcaatcaagaacttgcattttcataaaaaca 304  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||    
T  46016078 agaatgaaatgggctgaatttcccaagcctggcaacaatggcaagataaacatatgtgtatattaacactcaatcaagaacttgcattttcataaaaaca 46015979  T
Q  305 ggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgca 404  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  46015978 ggaaagcaaaaataattgtatgttcacatagttttaaagtcaagatgtaaatcataacagatggacgaagtacatgttaacccaaattaatataactgca 46015879  T
Q  405 aagaacatatcaatataccattacagcattgagtaaaacttactttctcctttt 458  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| ||| ||||    
T  46015878 aagaacatatcaatacatcattacagcattgagtaaaacttacttgctcttttt 46015825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 258 - 503
Target Start/End: Complemental strand, 46028069 - 46027825
Alignment:
Q  258 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||    
T  46028069 atgtgcatattaacactcaaacaagaacttgcatcttcataaaaacaggaaagcaaaaataattgtatcttcacatagttt-aaagtcaaaatttaaatc 46027971  T
Q  358 ataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcattgagtaaaacttactttctccttt 457  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  46027970 ataacagatggacgaagtacatgttaacctaaattaatttaactgcaaagaacatatcaatacaccattacagcattgagtaaaacttactttctcctct 46027871  T
Q  458 tcgctctgtgccccctactttttgtttcttaacaacatcattcttg 503  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  46027870 tcgcactgtgccccctactttttgtttcttaacaacatcattcttg 46027825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 52 - 389
Target Start/End: Complemental strand, 46021109 - 46020784
Alignment:
Q  52 gcttcttaccaaattctgtttaatgttttgatcaattaagaaatgaagggtgaggttattttaatatggctgaaactgttaaagagaaaaggagaagaaa 151  Q
    ||||||||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||   |||| |||    
T  46021109 gcttcttaccaaattctgtttaatgtttttatgaaataagaaatgaagg-tgaggttattttaatatggctgaaagtgttaaaaagaaagaaagaaaaaa 46021011  T
Q  152 aaagacaacgcacaacagccacagaaaaatagaagacatgcataggaaaaaatagaatgaaatgggttgaatttcccaagcctggcaacaatggcaagat 251  Q
    ||||||||| ||||||||||        |||| ||| |   ||||        ||||||||||||| ||||||||||||| |||||||||| ||||||||    
T  46021010 aaagacaacacacaacagcc--------ataggagata---atag--------agaatgaaatgggctgaatttcccaagtctggcaacaacggcaagat 46020930  T
Q  252 aaacacatgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaa------aataattgtatcttcgcatagttttaaagtc 345  Q
    | ||| |||| ||| |||||||||||||||||||||| |||||||| ||||||||||| |  |      ||||||||||||||| |||||||||||||||    
T  46020929 agacatatgtgcattttaacactcaatcaagaacttggattttcat-aaaacaggaaaacttatttgtgaataattgtatcttcacatagttttaaagtc 46020831  T
Q  346 aaaatgtaaatcataacagttgg---acgaagtacatgttaacccaa 389  Q
    |||| |||||||||||||| |||   | | |||||||||||||||||    
T  46020830 aaaacgtaaatcataacagatggatcaagtagtacatgttaacccaa 46020784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 257 - 386
Target Start/End: Complemental strand, 46015479 - 46015351
Alignment:
Q  257 catgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaat 356  Q
    ||||| |||||||||||||||||||||  |||||||||||||||| ||||||| ||| || |||| ||||||| ||| |||||||| |||||||||| ||    
T  46015479 catgtgcatattaacactcaatcaagaggttgcattttcataaaa-caggaaaacaacaagaattttatcttcacatggttttaaactcaaaatgtacat 46015381  T
Q  357 cataacagttggacgaagtacatgttaacc 386  Q
    |||||||| |||| ||||| ||||||||||    
T  46015380 cataacagatggatgaagtgcatgttaacc 46015351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 386
Target Start/End: Complemental strand, 46020710 - 46020583
Alignment:
Q  258 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||| |||||||||||||||||||||  ||||||||||||||||| |||||| |||||| |||||||||||| ||| |||||||| ||| || |||||||    
T  46020710 atgtgcatattaacactcaatcaagaggttgcattttcataaaaa-aggaaaacaaaaagaattgtatcttcacatggttttaaactcataaggtaaatc 46020612  T
Q  358 ataacagttggacgaagtacatgttaacc 386  Q
    ||||||| ||||  |||| ||||||||||    
T  46020611 ataacagatggattaagtgcatgttaacc 46020583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 258 - 450
Target Start/End: Original strand, 46303777 - 46303970
Alignment:
Q  258 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||| |||||||||||  |||||||| |||||||| | ||||||  ||||||||| ||| |||||| ||||| |||||||||||||||||||| ||||||    
T  46303777 atgtgcatattaacacaaaatcaagagcttgcattgtaataaaat-aggaaagcataaagaattgtgtcttcacatagttttaaagtcaaaatctaaatc 46303875  T
Q  358 ataacagttggacgaagtacatgttaa-cccaaattaatttaactgcaaagaacatatcaatataccattacagcattg-agtaaaacttacttt 450  Q
    ||||||| |||| ||| | |||||||| |||||  |||||| || ||||||||||| | ||||   ||| ||| ||||| |||||||||||||||    
T  46303876 ataacagatggatgaaatgcatgttaaccccaagctaatttcacagcaaagaacatgttaatacgacatcacaacattgaagtaaaacttacttt 46303970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 258 - 441
Target Start/End: Complemental strand, 46021381 - 46021197
Alignment:
Q  258 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||| |||||||||| ||||||||||  ||||||||  |||||| |||||||||| ||| |||||| |||||  ||  ||||||||||||  | ||||||    
T  46021381 atgtgcatattaacattcaatcaagaggttgcatttctataaaa-caggaaagcagaaagaattgtgtcttcaaatgattttaaagtcaa--tctaaatc 46021285  T
Q  358 ataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaat--atac--cattacagcattgagtaaa 441  Q
    ||||||| |||| | ||| ||||||||| |||||||||||||||||||| || |||| |||  ||||  |||||||||||||||||||    
T  46021284 ataacagatggatggagtgcatgttaactcaaattaatttaactgcaaataatatattaattaatacaacattacagcattgagtaaa 46021197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 258 - 386
Target Start/End: Original strand, 46246223 - 46246350
Alignment:
Q  258 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||| |||||||||| ||||||||||  ||||||||||||||||| ||||||  ||||| |||||||||||| ||  |||||||| | | || |||||||    
T  46246223 atgtgcatattaacattcaatcaagaggttgcattttcataaaaa-aggaaaaaaaaaagaattgtatcttcacaaggttttaaacttataaggtaaatc 46246321  T
Q  358 ataacagttggacgaagtacatgttaacc 386  Q
    ||||||| ||||  |||| ||||||||||    
T  46246322 ataacagatggattaagtgcatgttaacc 46246350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 46015672 - 46015607
Alignment:
Q  56 cttaccaaattctgtttaatgttttgatcaattaagaaatg-aagggtgaggttattttaatatgg 120  Q
    |||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  46015672 cttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatgg 46015607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 356
Target Start/End: Complemental strand, 41074537 - 41074446
Alignment:
Q  264 atattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaat 356  Q
    ||||||||||| |||||||| || |||||||| ||||| ||  |||||||||| |||||||||||| ||| |||||||||||||||| |||||    
T  41074537 atattaacactaaatcaagacctagcattttcttaaaa-cattaaagcaaaaagaattgtatcttcacatggttttaaagtcaaaatctaaat 41074446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 458
Target Start/End: Complemental strand, 46028379 - 46028345
Alignment:
Q  424 attacagcattgagtaaaacttactttctcctttt 458  Q
    |||||||||||||||||||||||||||||||||||    
T  46028379 attacagcattgagtaaaacttactttctcctttt 46028345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 46304065 - 46304130
Alignment:
Q  56 cttaccaaattctgtttaatgttttgatcaattaagaaatgaagggtgaggttattttaatatggct 122  Q
    |||| ||||||||| || |||||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  46304065 cttagcaaattctgatttatgttttgatcaattaagaaa-caagggtgagattattttaatacggct 46304130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 14320676 - 14320585
Alignment:
Q  267 ttaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcat 359  Q
    |||||| ||||||| ||  ||||||| |||||||| |||||||||||||  |||||||||||| ||| ||| || ||| || || ||||||||    
T  14320676 ttaacaatcaatcatgagattgcattctcataaaa-caggaaagcaaaatgaattgtatcttcacatggttctacagttaatatctaaatcat 14320585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 14321844 - 14321753
Alignment:
Q  267 ttaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcat 359  Q
    |||||| ||||||| ||  |||||||||||| ||| |||||||||||||  |||||||||||| ||| ||| || ||| || || ||||||||    
T  14321844 ttaacaatcaatcatgagattgcattttcatgaaa-caggaaagcaaaatgaattgtatcttcccatggttctacagttaatatctaaatcat 14321753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 258 - 364
Target Start/End: Original strand, 4522907 - 4523012
Alignment:
Q  258 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||| ||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||| ||||| ||| |||||||||||||||| ||||||    
T  4522907 atgtgcattttaacactcaatcaagagcttgaattttcataaaa-caggaaagcaaaaagaattgtgtcttcacatggttttaaagtcaaaatctaaatc 4523005  T
Q  358 ataacag 364  Q
    |||||||    
T  4523006 ataacag 4523012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 4525280 - 4525403
Alignment:
Q  258 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||| ||||||||||||||||||||| ||||  ||||||| |||||| ||||||||||| |||||  ||||| ||| |||||||||||||||  || |||    
T  4525280 atgtgcatattaacactcaatcaagagcttgatttttcat-aaaacaagaaagcaaaaagaattg--tcttcacatggttttaaagtcaaaacctagatc 4525376  T
Q  358 ataacagttggacgaagtacatgttaa 384  Q
    ||||||| |||| ||||| ||| ||||    
T  4525377 ataacagatggatgaagtgcattttaa 4525403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 4525565 - 4525626
Alignment:
Q  63 aattctgtttaatgttttgatcaattaagaaatg-aagggtgaggttattttaatatggctg 123  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||    
T  4525565 aattctgtttaatgtttttatcaaataagaaatgaaagggtgaggttgttttaatatggctg 4525626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 4522771 - 4522837
Alignment:
Q  61 caaattctgtttaatgttttgatcaattaagaaa-tgaagggtgaggttattttaatatggctgaaa 126  Q
    ||||||||||||||| |||||||||| |||||||   ||||||||| | |||||||||||| |||||    
T  4522771 caaattctgtttaatattttgatcaaataagaaacaaaagggtgagatcattttaatatggatgaaa 4522837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 258 - 459
Target Start/End: Original strand, 3802180 - 3802384
Alignment:
Q  258 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||| ||||||||||||||| |||||  ||| ||||||||||||  |||||||||||| |||||||| |||| ||| ||||||||||| |||| ||||||    
T  3802180 atgtgcatattaacactcaaacaagaggttgtattttcataaaat-aggaaagcaaaactaattgtagcttcacatggttttaaagtcgaaatctaaatc 3802278  T
Q  358 ataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatat---caata--tac-cattacagcattgagtaaaacttactttc 451  Q
    ||||||  || | ||| | ||| |||  ||||||||||||||| ||||  |||||||   ||| |  | |  ||||||||||||||||||||||||||||    
T  3802279 ataacatatgaaagaaatgcatattacgccaaattaatttaaccgcaa--aacatattgacaagaagtgcaaattacagcattgagtaaaacttactttc 3802376  T
Q  452 tccttttc 459  Q
    ||||||||    
T  3802377 tccttttc 3802384  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 395
Target Start/End: Original strand, 3802619 - 3802752
Alignment:
Q  258 atgtccatattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||| |||||||||||||||||||||  |||||||||||| |||| |||||| |||||  |||||||||||| |||  ||||||||||||||| |||       
T  3802619 atgtgcatattaacactcaatcaagaggttgcattttcat-aaaataggaaaacaaaacgaattgtatcttcacatgattttaaagtcaaaatctaa--- 3802714  T
Q  358 ataacagttggacgaagtacatgttaacccaaattaat 395  Q
    ||||||  |||| ||||| |||| || |||||||||||    
T  3802715 ataacaaatggaagaagtgcatgctagcccaaattaat 3802752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 419
Target Start/End: Original strand, 3801740 - 3801857
Alignment:
Q  304 aggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgtt--aacccaaattaatttaact 401  Q
    ||||||||| ||| |||||| ||||| ||| |||||||||||||||| ||||||||||||| |||| ||| | ||||||  | |||||| |||||| |||    
T  3801740 aggaaagcataaagaattgtgtcttcacatggttttaaagtcaaaatctaaatcataacagatggatgaaatgcatgtttaaccccaaactaatttcact 3801839  T
Q  402 gcaaagaacatatcaata 419  Q
    ||||||||| ||| ||||    
T  3801840 gcaaagaacgtattaata 3801857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 335 - 436
Target Start/End: Original strand, 3804128 - 3804229
Alignment:
Q  335 gttttaaagtcaaaatgtaaatcataacagttggacgaagtacatgttaacccaaattaatttaactgcaaagaacatatcaatataccattacagcatt 434  Q
    |||||||||||||||| ||||||||||||| |||| ||||| |||||||||||||| ||| || |  ||||||||||||| |||| | ||| ||| ||||    
T  3804128 gttttaaagtcaaaatttaaatcataacagatggatgaagtgcatgttaacccaaactaacttcatagcaaagaacatattaatacaacatcacaacatt 3804227  T
Q  435 ga 436  Q
    ||    
T  3804228 ga 3804229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 205 - 359
Target Start/End: Complemental strand, 50668681 - 50668519
Alignment:
Q  205 agaatgaaatgggttgaatttcccaagcctggcaacaatggcaagataaacaca---------tgtccatattaacactcaatcaagaacttgcattttc 295  Q
    ||||||||||||| | ||||| ||||| ||| ||||||| |||||||||||| |         ||| ||||||||||||| ||||||| |||||||||||    
T  50668681 agaatgaaatgggctcaattttccaagtctgacaacaatagcaagataaacataaccaacttatgtgcatattaacactcgatcaagagcttgcattttc 50668582  T
Q  296 ataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcat 359  Q
    || ||| ||| |||||||||| |||| ||| ||| |||  || |||||||||||| ||||||||    
T  50668581 at-aaagcagtaaagcaaaaagaattctattttcacatgcttctaaagtcaaaatctaaatcat 50668519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 375
Target Start/End: Complemental strand, 50668152 - 50668040
Alignment:
Q  263 catattaacactcaatcaagaacttgcattttcataaaaacaggaaagcaaaaataa-ttgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 361  Q
    |||||||||| ||||| |||| ||||||||||||||||  |||  ||||||||| || |||||||||| ||| ||| |||||||||||| |||||||| |    
T  50668152 catattaacattcaattaagagcttgcattttcataaag-cagtgaagcaaaaaaaaattgtatcttcacatggttctaaagtcaaaatttaaatcatga 50668054  T
Q  362 cagttggacgaagt 375  Q
    ||  ||||||||||    
T  50668053 catatggacgaagt 50668040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 458
Target Start/End: Original strand, 3803594 - 3803650
Alignment:
Q  402 gcaaagaacatatcaatataccattacagcattgagtaaaacttactttctcctttt 458  Q
    ||||||||||||  | || | |||||| |||||||||||||||||||||||||||||    
T  3803594 gcaaagaacatagtattacaacattacggcattgagtaaaacttactttctcctttt 3803650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 50669270 - 50669223
Alignment:
Q  390 attaatttaactgcaaagaacatatcaatataccattacagcattgag 437  Q
    ||||||| |||||||||||||| ||||||| | |||||||||||||||    
T  50669270 attaattcaactgcaaagaacacatcaatagaacattacagcattgag 50669223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 50667529 - 50667472
Alignment:
Q  70 tttaatgttttgatcaattaagaaat-gaagggtgaggttattttaatatggctgaaa 126  Q
    |||| |||||||||||| ||||||||  |||||||||| |||||||| ||||||||||    
T  50667529 tttattgttttgatcaaataagaaatcaaagggtgaggatattttaacatggctgaaa 50667472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 357
Target Start/End: Original strand, 52806350 - 52806429
Alignment:
Q  278 tcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatc 357  Q
    |||||| ||| ||| |||||||||||| ||||| ||||| ||||| |||||| ||| ||| |||||||||||| ||||||    
T  52806350 tcaagagcttccatgttcataaaaacaagaaagaaaaaagaattgcatcttcacattgttctaaagtcaaaatctaaatc 52806429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 5721 - 5806
Alignment:
Q  275 caatcaagaacttgcattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 361  Q
    |||||||||  || ||||||||||||| || |||| |||||| |||||||||| | || |||| ||||||||| |||||||||||||    
T  5721 caatcaagagttttcattttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataa 5806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 7947 - 8018
Alignment:
Q  289 cattttcataaaaacaggaaagcaaaaataattgtatcttcgcatagttttaaagtcaaaatgtaaatcataa 361  Q
    ||||||||||||| || |||| |||||| |||||||||| | || |||| ||||||||| |||||||||||||    
T  7947 cattttcataaaa-caagaaaacaaaaagaattgtatctacacaaagttctaaagtcaacatgtaaatcataa 8018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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