View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11243_low_5 (Length: 410)
Name: NF11243_low_5
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11243_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 33 - 395
Target Start/End: Original strand, 48873161 - 48873522
Alignment:
| Q |
33 |
cttttcaatatgaaacctagctattggattcagttgattttaaaattttaatttatattgaagcaggtaccaatccctgttggctgatgctgtgaatgga |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48873161 |
cttttcaatatgaaacctagctattggattcagttgattttaaaattttaatttatattgaagcaggtaccaatccctgttggctgatgctgtcaatgga |
48873260 |
T |
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| Q |
133 |
atgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaataatctgagatcactattggctgatccgtcactgtcactggattacacc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48873261 |
atgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaataatctgagatcactattggctgatccgtcactgtcactggattacacc |
48873360 |
T |
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| Q |
233 |
tcttttcttttttattgtgcatttcagcaatttctttatcaaaacaaaaatatgatgggacacgagttttgttgaactttaagtcttggtcaaaccatat |
332 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48873361 |
tcttttcttttttattgtgcatttcagc-atttctttatcaaaacaaaaatatgatgggacacgagttttgttgaactttaagtcttggtcaaaccatat |
48873459 |
T |
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| Q |
333 |
agattgctgtattggtggtgttatttttgtcagaccttttatatatatgttttcaaggctgtg |
395 |
Q |
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| T |
48873460 |
agattgctgtattggtggtgttatttttgtcagaccttttatatgtatgttttcaaggctgtg |
48873522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 33 - 395
Target Start/End: Original strand, 48878465 - 48878826
Alignment:
| Q |
33 |
cttttcaatatgaaacctagctattggattcagttgattttaaaattttaatttatattgaagcaggtaccaatccctgttggctgatgctgtgaatgga |
132 |
Q |
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| T |
48878465 |
cttttcaatatgaaacctagctattggattcagttgattttaaaattttaatttatattgaagcaggtaccaatccctgttggctgatgctgtcaatgga |
48878564 |
T |
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| Q |
133 |
atgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaataatctgagatcactattggctgatccgtcactgtcactggattacacc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48878565 |
atgtgaagctgtggatgattgtttgtgaccagctatgctggtaaggttaaataatctgagatcactattggctgatccgtcactgtcactggattacacc |
48878664 |
T |
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| Q |
233 |
tcttttcttttttattgtgcatttcagcaatttctttatcaaaacaaaaatatgatgggacacgagttttgttgaactttaagtcttggtcaaaccatat |
332 |
Q |
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| T |
48878665 |
tcttttcttttttattgtgcatttcagc-atttctttatcaaaacaaaaatatgatgggacacgagttttgttgaactttaagtcttggtcaaaccatat |
48878763 |
T |
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| Q |
333 |
agattgctgtattggtggtgttatttttgtcagaccttttatatatatgttttcaaggctgtg |
395 |
Q |
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| T |
48878764 |
agattgctgtattggtggtgttatttttgtcagaccttttatatgtatgttttcaaggctgtg |
48878826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 48856652 - 48856758
Alignment:
| Q |
79 |
tttaatttatattgaagcaggtaccaatccctgttggctgatgctgtgaatggaatgtgaagctgtggatgattgtttgtgaccagctatgctggtaagg |
178 |
Q |
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|||| ||||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||||||||||| | || || ||||||||||| ||||| |
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| T |
48856652 |
tttagtttatattgaagcagatggcaatccctgttggctgctgcagtgaatggaatgtgaagctgtggatgat--tatgggatcagctatgctgataagg |
48856749 |
T |
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| Q |
179 |
ttaaataat |
187 |
Q |
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|| |||||| |
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| T |
48856750 |
tttaataat |
48856758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 331
Target Start/End: Original strand, 48866420 - 48866475
Alignment:
| Q |
276 |
acaaaaatatgatgggacacgagttttgttgaactttaagtcttggtcaaaccata |
331 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48866420 |
acaaaaatatgatgggacgtgagttttgttgaactttaagtcttggtcaaaccata |
48866475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 48841989 - 48841929
Alignment:
| Q |
303 |
gttgaactttaagtcttggtcaaaccatatagattgctgtattggtggtgttatttttgtca |
364 |
Q |
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|||||| | |||||||||||||||||||| || ||||||||||||| || |||||||||||| |
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| T |
48841989 |
gttgaaatataagtcttggtcaaaccatacagtttgctgtattggtagt-ttatttttgtca |
48841929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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