View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11243_low_6 (Length: 397)

Name: NF11243_low_6
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11243_low_6
NF11243_low_6
[»] chr2 (2 HSPs)
chr2 (37-385)||(23379252-23379600)
chr2 (175-307)||(44885752-44885884)
[»] chr3 (9 HSPs)
chr3 (14-384)||(16739820-16740190)
chr3 (179-307)||(49642078-49642206)
chr3 (255-318)||(31661604-31661667)
chr3 (255-318)||(31808608-31808671)
chr3 (255-318)||(31934686-31934749)
chr3 (255-318)||(31972944-31973007)
chr3 (255-318)||(38015693-38015756)
chr3 (198-307)||(19771126-19771235)
chr3 (48-85)||(8565693-8565730)
[»] chr4 (1 HSPs)
chr4 (17-98)||(16582731-16582812)
[»] chr7 (6 HSPs)
chr7 (201-384)||(13015539-13015722)
chr7 (240-384)||(15630628-15630772)
chr7 (175-307)||(17239223-17239355)
chr7 (255-318)||(41600880-41600943)
chr7 (14-103)||(13015353-13015442)
chr7 (14-87)||(15632907-15632980)
[»] chr5 (2 HSPs)
chr5 (240-384)||(2158393-2158537)
chr5 (256-318)||(16084517-16084579)
[»] chr1 (5 HSPs)
chr1 (175-307)||(24082833-24082965)
chr1 (176-304)||(40490565-40490693)
chr1 (255-318)||(21703397-21703460)
chr1 (14-76)||(41116877-41116939)
chr1 (207-307)||(41340358-41340458)
[»] scaffold0252 (1 HSPs)
scaffold0252 (265-318)||(7365-7418)
[»] chr8 (5 HSPs)
chr8 (255-298)||(27978209-27978252)
chr8 (255-298)||(28035478-28035521)
chr8 (175-382)||(14658242-14658449)
chr8 (48-85)||(35284713-35284750)
chr8 (258-318)||(35284480-35284540)
[»] scaffold0011 (1 HSPs)
scaffold0011 (175-307)||(191555-191687)
[»] chr6 (2 HSPs)
chr6 (255-318)||(9958673-9958736)
chr6 (175-307)||(30588447-30588579)
[»] scaffold0414 (1 HSPs)
scaffold0414 (265-314)||(9879-9928)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 37 - 385
Target Start/End: Complemental strand, 23379600 - 23379252
Alignment:
Q  37 ggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccggcataggaggctgccacgctcggacatttaggggagccgaagtggaagg 136  Q
    ||||||||||||| ||||| || | |||||| || ||||||||||||||||||| |||||||| ||||  || ||||||  | | | ||||||||| |||    
T  23379600 ggttgagggaggaggagaaagcagcgtcaatgttacatttatatctacccggcagaggaggctaccactttcagacattgggtgaaaccgaagtggtagg 23379501  T
Q  137 tcccccctcaattgataattacggttggtgttgactatttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcat 236  Q
    ||||||||||| ||| | |  ||| |||| ||||||| |||||||| | || |||||||||||||||||||||||||||| ||||||||||| ||||| |    
T  23379500 tcccccctcaagtgacagtgtcggctggttttgactagttgatgcaggcacttcgggagtgttagctagctgccaatcaagaaccatattccgggctcgt 23379401  T
Q  237 tccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttgtccgtcgttgtaaaagat 336  Q
    || ||    ||||||||||||||||||||||||||||| |||  ||| |||| |||||||||||||||||| || ||||||||    | |||| |||| |    
T  23379400 tcaactgttgtagcgctggtttctgtgacatcttcccatacttgaaggttgcagtgtttccaaatgctccaaattacagttgttaaacattgtgaaagtt 23379301  T
Q  337 cagccgacaagttttcaagtatagaaaaaatggcagctgtagttgatgt 385  Q
    || ||||||| |||||||| | ||||||||||||||| |||| ||||||    
T  23379300 caaccgacaaattttcaagcaaagaaaaaatggcagccgtagatgatgt 23379252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 44885884 - 44885752
Alignment:
Q  175 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttccca 274  Q
    |||||||||||||| | ||||| ||||| | |||||| ||||  |||||||| || || |  ||||| ||||| || ||||||||||||||||  |||||    
T  44885884 ttgatgcaagaaccgcaggagtattagccaactgccagtcaacgaccatatttctagcacgctccactaccgttgcactggtttctgtgacattatccca 44885785  T
Q  275 aactctaagattgcggtgtttccaaatgctcca 307  Q
    |||||| || || ||||||||||||||||||||    
T  44885784 aactctgaggttccggtgtttccaaatgctcca 44885752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 384
Target Start/End: Original strand, 16739820 - 16740190
Alignment:
Q  14 gacacaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccggcataggaggctgccacgctcggaca 113  Q
    ||||||||| |||||||||||  ||||||||||||| ||||||||    ||||| ||||||||||||| |||||| | ||||||  |||| |   |   |    
T  16739820 gacacaaatatcaataccagtgtggttgagggaggaagagaacgcaacatcaatgttgcatttatatcgacccggaagaggaggtcgccaagaatgtgta 16739919  T
Q  114 tttaggggagccgaagtggaaggtcccccctcaattgataattacggttggtgttgactatttgatgcaagaacctcgggagtgttagctagctgccaat 213  Q
     || ||||  |||||||||| |||||||||||||  | || |  || |||||||||||| || ||||| ||  || | |||   || |||| ||||||||    
T  16739920 atttggggccccgaagtggacggtcccccctcaaagggtattggcgattggtgttgactgttagatgctagggccgctggatcattggctaactgccaat 16740019  T
Q  214 caataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgac 313  Q
    ||| ||||||  | | |||||  || ||||||||||||||  ||||||  ||||| ||||| || | ||||||||||||||||||||||||||| || ||    
T  16740020 caacaaccatgcttcgggctcggtcaaccaccgtagcgctcatttctgaaacatcgtcccagacgcgaagattgcggtgtttccaaatgctccatattac 16740119  T
Q  314 agttgtccgtcgttgtaaaagatcagccgacaagttttcaagtatagaaaaaatggcagctgtagttgatg 384  Q
     |||||| |||||||| |||| |||  ||||||| ||||||| | ||||||||| |||| ||||| |||||    
T  16740120 ggttgtcagtcgttgtgaaagttcaatcgacaaggtttcaagcaaagaaaaaattgcagttgtagatgatg 16740190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 307
Target Start/End: Complemental strand, 49642206 - 49642078
Alignment:
Q  179 tgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttcccaaact 278  Q
    |||||||||| |  |||| ||||| || ||||||||||  |||||||| || || |  ||||| ||||| || ||||||||||||||||  |||||||||    
T  49642206 tgcaagaaccgcaagagtattagccagttgccaatcaacgaccatatttctagcacgctccactaccgttgcactggtttctgtgacattatcccaaact 49642107  T
Q  279 ctaagattgcggtgtttccaaatgctcca 307  Q
    || || || ||||||||||||||||||||    
T  49642106 ctgaggttccggtgtttccaaatgctcca 49642078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 31661604 - 31661667
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||| | |||||||||||||||||    
T  31661604 gtttcagtggcatcgtcccaaactcgaagattgcggtgtttccataagctccacatgacagttg 31661667  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 31808671 - 31808608
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||| | |||||| ||||||||||    
T  31808671 gtttctgtaacatcgtcccaaactctaagattacggtgtttccataagctccaaatgacagttg 31808608  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 31934749 - 31934686
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||| | |||||||||||||||||    
T  31934749 gtttcagtggcatcgtcccaaactcgaagattgcggtgtttccataagctccacatgacagttg 31934686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 31973007 - 31972944
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||| | |||||||||||||||||    
T  31973007 gtttcagtggcatcgtcccaaactcgaagattgcggtgtttccataagctccacatgacagttg 31972944  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 38015693 - 38015756
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    |||||| | ||||||||||||||||||||||||||||||||| |||| ||||| || |||||||    
T  38015693 gtttctattacatcttcccaaactctaagattgcggtgtttcaaaatactccatattacagttg 38015756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 307
Target Start/End: Original strand, 19771126 - 19771235
Alignment:
Q  198 ttagctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttcc 297  Q
    ||||| || |||||||||| ||||| |||||| || ||||| || |||||||| || | |||  |  |||| || |||||||||||||| ||||||||||    
T  19771126 ttagccagttgccaatcaacaaccaaattcctagcacattcaacaaccgtagcactagcttccatagcatcatctcaaactctaagattacggtgtttcc 19771225  T
Q  298 aaatgctcca 307  Q
    ||| ||||||    
T  19771226 aaaggctcca 19771235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 8565730 - 8565693
Alignment:
Q  48 gatgagaacgcggtgtcaatattgcatttatatctacc 85  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  8565730 gatgagaacgctgcgtcaatattgcatttatatctacc 8565693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 16582731 - 16582812
Alignment:
Q  17 acaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccggcataggaggc 98  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  16582731 acaaatttcaataccagttcgattgagggaggatgagaacgcggcgtcaatattgcatttatatctacctggcataggaggc 16582812  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 384
Target Start/End: Original strand, 13015539 - 13015722
Alignment:
Q  201 gctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaa 300  Q
    |||| ||||||||||| ||||||  | | |||||  || |||||| ||||||| |||||||  ||||| ||||| || | ||||||| ||||||||||||    
T  13015539 gctaactgccaatcaacaaccatgcttcgggctcggtcaaccaccatagcgcttgtttctgaaacatcatcccagacgcgaagattgtggtgtttccaaa 13015638  T
Q  301 tgctccacatgacagttgtccgtcgttgtaaaagatcagccgacaagttttcaagtatagaaaaaatggcagctgtagttgatg 384  Q
    ||||||| || || |||||| |||||||| |||| |||  ||||||| ||||||| | ||||||||| | |||||||| |||||    
T  13015639 tgctccatattacggttgtcagtcgttgtgaaagttcaatcgacaaggtttcaagcaaagaaaaaattgtagctgtagatgatg 13015722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 384
Target Start/End: Complemental strand, 15630772 - 15630628
Alignment:
Q  240 accaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttgtccgtcgttgtaaaagatcag 339  Q
    |||||||||||||| |||||||  ||||| ||||| |  | ||||| ||||||||||||||||||||| || || |||||| |||||||| |||| |||     
T  15630772 accaccgtagcgctcgtttctgaaacatcgtcccagatgcgaagatcgcggtgtttccaaatgctccatattacggttgtcagtcgttgtgaaagttcaa 15630673  T
Q  340 ccgacaagttttcaagtatagaaaaaatggcagctgtagttgatg 384  Q
     | ||||| |||| || | ||||||||| |||||||||| |||||    
T  15630672 tcaacaaggtttcgagcaaagaaaaaattgcagctgtagatgatg 15630628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 17239223 - 17239355
Alignment:
Q  175 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttccca 274  Q
    |||||||||||||| |  |||| ||||| || ||||||||||  |||||||| || || |  ||||| ||||| || ||||||||||||||||  |||||    
T  17239223 ttgatgcaagaaccgcatgagtattagccagttgccaatcaacgaccatatttctagcacgctccactaccgttgcactggtttctgtgacattatccca 17239322  T
Q  275 aactctaagattgcggtgtttccaaatgctcca 307  Q
    |||||| || || ||||||||||||||||||||    
T  17239323 aactctgaggttccggtgtttccaaatgctcca 17239355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 41600943 - 41600880
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    |||| ||| ||||| ||||||||||||||||||| ||||||||| | |||||||||||||||||    
T  41600943 gtttttgtaacatcgtcccaaactctaagattgcagtgtttccataagctccacatgacagttg 41600880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 13015353 - 13015442
Alignment:
Q  14 gacacaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccggcataggaggctgcca 103  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||    ||||| ||||||||||||| |||||| | |||||| |||||    
T  13015353 gacacaaataccaataccagtgcggttgagggaggaagagaacgcaacatcaatgttgcatttatatcgacccggaagaggaggttgcca 13015442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 15632980 - 15632907
Alignment:
Q  14 gacacaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccg 87  Q
    |||||||||  ||||||||||  ||||||||||||| |||||||| |  ||||| ||||||||||||| |||||    
T  15632980 gacacaaataccaataccagtgtggttgagggaggaagagaacgcagcatcaatgttgcatttatatcgacccg 15632907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 384
Target Start/End: Original strand, 2158393 - 2158537
Alignment:
Q  240 accaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttgtccgtcgttgtaaaagatcag 339  Q
    |||||||||||||| |||| ||  ||||  ||||| || | |||||| |||||||||||||||||||| || || |||||| |||||||| |||| |||     
T  2158393 accaccgtagcgctcgtttttgaaacattgtcccagacgcgaagattccggtgtttccaaatgctccatattacggttgtcagtcgttgtgaaagttcaa 2158492  T
Q  340 ccgacaagttttcaagtatagaaaaaatggcagctgtagttgatg 384  Q
     ||||||| ||||||| | ||||||||| ||| |||||| |||||    
T  2158493 tcgacaaggtttcaagcaaagaaaaaattgcaactgtagatgatg 2158537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 16084579 - 16084517
Alignment:
Q  256 tttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  16084579 tttctgtaacatcgtcccaaactctaagattgcggtgtttccataagctccacatgacagttg 16084517  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 24082965 - 24082833
Alignment:
Q  175 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttccca 274  Q
    ||||||||||||||   ||||| ||||| || |||||||||| ||||||||| || || |  ||||| ||||| || ||||||||||||||||  |||||    
T  24082965 ttgatgcaagaaccgtaggagtattagccagttgccaatcaacaaccatatttctagcacgctccactaccgttgcactggtttctgtgacattatccca 24082866  T
Q  275 aactctaagattgcggtgtttccaaatgctcca 307  Q
    |||||| || ||  |||||||||||| ||||||    
T  24082865 aactctgaggttctggtgtttccaaaggctcca 24082833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 304
Target Start/End: Original strand, 40490565 - 40490693
Alignment:
Q  176 tgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttcccaa 275  Q
    |||||||||| |  ||||||||||||| |  || |||||||  ||||| ||||| || || ||||| |||  ||| ||||||||  | ||||| ||||||    
T  40490565 tgatgcaagagcgacgggagtgttagccaaatgtcaatcaacgaccattttcctagcacactccacaacctaagcactggtttccataacatcatcccaa 40490664  T
Q  276 actctaagattgcggtgtttccaaatgct 304  Q
    |||||||| || |||||||||||||||||    
T  40490665 actctaaggttacggtgtttccaaatgct 40490693  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 21703397 - 21703460
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    |||||||| ||||| || ||||||||||||||||||||||||||    ||||||||||||||||    
T  21703397 gtttctgtaacatcgtcacaaactctaagattgcggtgtttccatcaactccacatgacagttg 21703460  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 41116939 - 41116877
Alignment:
Q  14 gacacaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcattt 76  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||  ||||| ||||||||    
T  41116939 gacacaaataccaataccagtgcggttgagggaggaagagaacgcggcatcaatgttgcattt 41116877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 41340458 - 41340358
Alignment:
Q  207 tgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctcc 306  Q
    |||||||||| || || |||||| || | ||| || |||||||| || | |||||| ||| | || |||||||||||||| ||||| ||||||| |||||    
T  41340458 tgccaatcaacaaacagattcctagcacgttcaacaaccgtagcacttgcttctgtaacaacatctcaaactctaagattacggtgcttccaaaggctcc 41340359  T
Q  307 a 307  Q
    |    
T  41340358 a 41340358  T

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Target: scaffold0252 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 7418 - 7365
Alignment:
Q  265 catcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    |||| |||||||||||||||||| |||||||||| | |||||||||||||||||    
T  7418 catcgtcccaaactctaagattgtggtgtttccataagctccacatgacagttg 7365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 27978252 - 27978209
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttcca 298  Q
    |||| ||| |||||||||||||||||||||||||||||||||||    
T  27978252 gtttttgtaacatcttcccaaactctaagattgcggtgtttcca 27978209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 28035521 - 28035478
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttcca 298  Q
    |||| ||| |||||||||||||||||||||||||||||||||||    
T  28035521 gtttttgtaacatcttcccaaactctaagattgcggtgtttcca 28035478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 382
Target Start/End: Original strand, 14658242 - 14658449
Alignment:
Q  175 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttccca 274  Q
    |||||||||||||   ||| |||||||| | ||||||||| |  ||||| ||||| |||| |||| |||| ||||| || |||| | | ||||| ||| |    
T  14658242 ttgatgcaagaactgtgggggtgttagccaactgccaatctacgaccatgttcctagctcgttcctccactgtagcactagtttttattacatcatccaa 14658341  T
Q  275 aactctaagattgcggtgtttccaaatgctccacatgacagttgtccgtcgttgtaaaagatcagccgacaagttttcaagtatagaaaaaatggcagct 374  Q
    |||  ||||||| || |||||||| || ||||| || |||||| ||  |||||||  ||||||| | || || |||||||| |  |||||||| ||| |     
T  14658342 aaccttaagattacgatgtttccagatactccaaatcacagttatcaatcgttgtgcaagatcaacagataaattttcaagcaacgaaaaaatagcatcc 14658441  T
Q  375 gtagttga 382  Q
    ||||||||    
T  14658442 gtagttga 14658449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 35284750 - 35284713
Alignment:
Q  48 gatgagaacgcggtgtcaatattgcatttatatctacc 85  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  35284750 gatgagaacgctgcgtcaatattgcatttatatctacc 35284713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 35284540 - 35284480
Alignment:
Q  258 tctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    ||||| |||||||||||||| | |||||| |||||||||||||  ||||| ||||| ||||    
T  35284540 tctgtaacatcttcccaaacacgaagattacggtgtttccaaagactccatatgaccgttg 35284480  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 191555 - 191687
Alignment:
Q  175 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttccca 274  Q
    |||||||||||||| | ||||| |||||||| || |||||||  |||||||| || || |  ||||| ||||| |  || |||||| ||||||  || ||    
T  191555 ttgatgcaagaaccacaggagtattagctagttgacaatcaacgaccatatttctagcacgctccactaccgttgtactagtttctatgacattatcgca 191654  T
Q  275 aactctaagattgcggtgtttccaaatgctcca 307  Q
    |||||| || || | ||||||||||||||||||    
T  191655 aactctgaggttcctgtgtttccaaatgctcca 191687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 9958736 - 9958673
Alignment:
Q  255 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 318  Q
    |||||||| ||||| ||| ||||||||||||| | ||||||||| | |||||| ||||||||||    
T  9958736 gtttctgtaacatcgtcctaaactctaagattacagtgtttccataagctccatatgacagttg 9958673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 30588579 - 30588447
Alignment:
Q  175 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcattccaccaccgtagcgctggtttctgtgacatcttccca 274  Q
    |||||||||||||| |  |||| ||||| || |  |||||||  |||||||| || || || ||||| || || || || |||||| ||||||  |||||    
T  30588579 ttgatgcaagaaccacatgagtattagccagttttcaatcaacgaccatatttctagcacactccactactgttgcactagtttctatgacattatccca 30588480  T
Q  275 aactctaagattgcggtgtttccaaatgctcca 307  Q
    |||||| || ||  |||||||||||||||||||    
T  30588479 aactctgaggttttggtgtttccaaatgctcca 30588447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 9879 - 9928
Alignment:
Q  265 catcttcccaaactctaagattgcggtgtttccaaatgctccacatgaca 314  Q
    |||| |||||||||| |||||| ||||||||||| | |||||||||||||    
T  9879 catcgtcccaaactcgaagatttcggtgtttccataagctccacatgaca 9928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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