View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11243_low_9 (Length: 342)
Name: NF11243_low_9
Description: NF11243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11243_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 55983399 - 55983722
Alignment:
| Q |
1 |
ctctaccccttgctacacacaacacttccattcatttgcagataatgatacgaccgacaataaagagagatttctcgtgctcttcttacttaaatcgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55983399 |
ctctaccccttgctacacacaacacttccattcatttgcagataatgatacgaccgacaataaagagagatttctcgtgctcttcttacttaaatcgtga |
55983498 |
T |
|
| Q |
101 |
taccttcaccaacaatgatatgtttcaaaccaatatacatgaaacattcatcagcaaacagaactcaaattattgaatatcaagtcttctaattgaacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55983499 |
taccttcaccaacaatgatatgtttcaaaccaatatacatgaaacattcatcagcaaacagaactcaaattattgaatatcaagtcttctaattgaacat |
55983598 |
T |
|
| Q |
201 |
gttatagattgccatagatatcatagaacaataatcttatcaatgaatgggcgaaaatttcaatcttctcaatctattgataacaaatagcactaaaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55983599 |
gttatagattgccatagatatcatagaacaataatcttatcaatgaatgggcgaaaatttcaatcttctcaatctattgataacaaatagcactaaaaga |
55983698 |
T |
|
| Q |
301 |
aattgtttctgcattggcacaaat |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
55983699 |
aattgtttctgcattggcacaaat |
55983722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 6298409 - 6298660
Alignment:
| Q |
22 |
acacttccattcatttgcagataatgatacgaccgacaataaagagagatttctcgtgctcttcttacttaaatcgtgataccttcaccaacaatgatat |
121 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||| || |||||| |||||||||||||||||||||||||| || ||| ||||||| ||| |||||||| | |
|
|
| T |
6298409 |
acacttccattcctttgcagatcgagatctgactgataataaaaagagatttctcgtgctcttcttacttcaaccgtaatacctttacccacaatgatgt |
6298508 |
T |
|
| Q |
122 |
gtttcaaaccaatatacatgaaacattcatcagcaaacagaactc--aaattattgaat-------atcaagtcttctaattgaacatgttatagattgc |
212 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||| || | |||||||||| ||||| || ||| ||| |||||||||||||||| |
|
|
| T |
6298509 |
gtttcaaaccattatac--gaaacattcatctgcaaacagaattcagagattattgaatttcaagattcaagactgctatttggacatgttatagattgc |
6298606 |
T |
|
| Q |
213 |
catagatatcatagaacaataatcttatcaatgaatgggcgaaaatttcaatct |
266 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | |||| || |||||||||| |
|
|
| T |
6298607 |
catagatatcatagaacgataatcttatcaatatacgggcaaacatttcaatct |
6298660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University