View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11244_low_2 (Length: 525)

Name: NF11244_low_2
Description: NF11244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11244_low_2
NF11244_low_2
[»] chr6 (13 HSPs)
chr6 (10-501)||(26890735-26891226)
chr6 (11-202)||(27713769-27713960)
chr6 (24-157)||(26853961-26854094)
chr6 (26-113)||(26631760-26631847)
chr6 (26-113)||(26737735-26737822)
chr6 (28-145)||(27422277-27422394)
chr6 (24-124)||(27651942-27652041)
chr6 (11-103)||(26966390-26966482)
chr6 (10-98)||(31289542-31289630)
chr6 (142-196)||(27651844-27651898)
chr6 (139-212)||(26641217-26641290)
chr6 (139-212)||(26747183-26747256)
chr6 (139-208)||(26828715-26828784)
[»] scaffold0349 (1 HSPs)
scaffold0349 (11-202)||(17984-18175)
[»] chr8 (2 HSPs)
chr8 (8-202)||(29269635-29269829)
chr8 (433-491)||(12072659-12072717)
[»] scaffold0003 (1 HSPs)
scaffold0003 (28-145)||(64969-65086)
[»] chr4 (5 HSPs)
chr4 (272-346)||(5078646-5078720)
chr4 (131-213)||(18682705-18682787)
chr4 (131-181)||(18650319-18650369)
chr4 (131-180)||(18718539-18718588)
chr4 (165-209)||(18692037-18692081)
[»] chr2 (1 HSPs)
chr2 (131-187)||(946412-946469)


Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 10 - 501
Target Start/End: Original strand, 26890735 - 26891226
Alignment:
Q  10 cagaacctgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890735 cagaacttgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacaga 26890834  T
Q  110 acttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaat 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890835 acttatgtagcagcagcaacacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaat 26890934  T
Q  210 ctctttctggtatgatgatgtgaatgaatgccttttcaccctggacacacgaggctcgactgtttggtgtcccaattcattgacatatatggtgggaaga 309  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26890935 ctctttctggtatgataatgtgaatgaatgccttttcaccctggacacaagaggctcgactgtttggtgtcccaattcattgacatatatggtgggaaga 26891034  T
Q  310 tgtttcaattgtaaggttttaggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaaat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891035 tgtttcaattgtaaggttttaggtgtaaatatcacaaatctagcagaatgtgctatatgtgcatgtaaatatgtattcgggaagagaaagaaatgcaaat 26891134  T
Q  410 atcataattgaatgtttatgttaagaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgt 501  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26891135 atcataattgaatgtttgtgttaagaaaaatgctatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttggattatgtgt 26891226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 27713960 - 27713769
Alignment:
Q  11 agaacctgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaa 110  Q
    ||||| |||||  |||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  27713960 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaa 27713861  T
Q  111 cttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 202  Q
    ||| |||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  27713860 cttgtgtagcagcaacaacatatgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 27713769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 26853961 - 26854094
Alignment:
Q  24 cagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagc 123  Q
    |||||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||  |||| |||    
T  26853961 cagcaacaacactgtatggctcttgtgattaataagttattcttgtgtaaaaacaattttctgccaagtcagttttctgagacagaacttgcgtaggagc 26854060  T
Q  124 agcaaaacatgtatgtatgattaatttgctttta 157  Q
    || || |||| |||||||||||||||| ||||||    
T  26854061 agaaacacatatatgtatgattaatttcctttta 26854094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 26631760 - 26631847
Alignment:
Q  26 gcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaactt 113  Q
    |||||||||  | ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  26631760 gcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacagaactt 26631847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 26737735 - 26737822
Alignment:
Q  26 gcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaactt 113  Q
    |||||||||  | ||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  26737735 gcaacaacattgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacagaactt 26737822  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 27422394 - 27422277
Alignment:
Q  28 aacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagca 127  Q
    |||||||| | ||||||||||| ||||||||| ||||||| ||||||| || ||||||||||||||| |||||||  ||||||||| ||| |||||| ||    
T  27422394 aacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacagaacttgtgtcgcagcaaca 27422295  T
Q  128 aaacatgtatgtatgatt 145  Q
    | | ||||||||||||||    
T  27422294 acaaatgtatgtatgatt 27422277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 27652041 - 27651942
Alignment:
Q  24 cagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagc 123  Q
    |||||||||||| | ||  || |||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| | |||||||    
T  27652041 cagcaacaacactgtataacttttgtgattaataagttattcatgtgtaaaaacacttttctgccaaatcagtttt-tgagacagaacttgtttagcagc 27651943  T

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Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 26966390 - 26966482
Alignment:
Q  11 agaacctgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctga 103  Q
    ||||| |||||  ||||||||| || | |||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  26966390 agaacttgtgtagcagcaacaaaactgtatggctcttgagattaataaggtattcttgtgtaaaaacactttgctgccaaatcagttttctga 26966482  T

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Target: chr6; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 31289542 - 31289630
Alignment:
Q  10 cagaacctgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttt 98  Q
    ||||||||||||  ||| |||||||| | ||||||||||||||||||||| ||||||| ||||||||||||| |||||||  |||||||    
T  31289542 cagaacctgtgtagcagaaacaacactgtatggctcttgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 31289630  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 27651898 - 27651844
Alignment:
Q  142 gattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagat 196  Q
    |||||||||||||||| || ||||||||||||||||||||| |||||||||||||    
T  27651898 gattaatttgcttttacgaatacaagagtttgtacatattgcgatactgacagat 27651844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 26641217 - 26641290
Alignment:
Q  139 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 212  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26641217 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26641290  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 26747183 - 26747256
Alignment:
Q  139 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctc 212  Q
    ||||||||| ||| ||||| || |||||| |||| |||||| ||||||| ||||||||||||||||||||||||    
T  26747183 tatgattaaattgattttaggaatacaagtgtttctacatactgtgatattgacagatggttcatcacaatctc 26747256  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 26828715 - 26828784
Alignment:
Q  139 tatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaa 208  Q
    ||||||||| |||| |||| || |||||| ||||||||||| ||||||| ||| |||| |||| ||||||    
T  26828715 tatgattaaattgcctttaggaatacaagtgtttgtacatactgtgatattgaaagatagttcctcacaa 26828784  T

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Target: scaffold0349 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 17984 - 18175
Alignment:
Q  11 agaacctgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaa 110  Q
    ||||| |||||  |||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  17984 agaacttgtgtagcagcaacaacactgtatgtctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaa 18083  T
Q  111 cttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 202  Q
    ||| |||||||||| ||| | ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||| ||||    
T  18084 cttgtgtagcagcaacaacatatgtatgtatgattaatttgcttttaataatacaagagtatgtacatattgtgataccgacagatgtttca 18175  T

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Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 29269829 - 29269635
Alignment:
Q  8 agcagaacctgtgtcacagcaacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagaca 107  Q
    |||||||| |||||  |||||||||||| | |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||| ||||||    
T  29269829 agcagaacttgtgtagcagcaacaacactgtatggctcttgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcacttttcagagaca 29269730  T
Q  108 gaacttatgtagcagcagcaaaacatgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttca 202  Q
    |||||| |||||||||| ||| | ||||||| ||||||||||||||||||| | ||||||||| |||| |||||||||||| ||| |||| ||||    
T  29269729 gaacttgtgtagcagcaacaacatatgtatgcatgattaatttgcttttaataatacaagagtatgtagatattgtgataccgactgatgtttca 29269635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 433 - 491
Target Start/End: Original strand, 12072659 - 12072717
Alignment:
Q  433 agaaaaatactatttctcgcgacagattccttcccgagagtgtcccgaatgacatgttg 491  Q
    |||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  12072659 agaaaaatgctatttctcgcgacagtttccttcccgagagtgacccgaatgacatgttg 12072717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 145
Target Start/End: Original strand, 64969 - 65086
Alignment:
Q  28 aacaacaccgaatggctcttgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaacttatgtagcagcagca 127  Q
    |||||||| | ||||||||||| ||||||||| ||||||| ||||||| || ||||||||||||||| |||||||  ||||||||| ||| |||||| ||    
T  64969 aacaacactgtatggctcttgtaattaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacagaacttgtgtcgcagcaaca 65068  T
Q  128 aaacatgtatgtatgatt 145  Q
    | | ||||||||||||||    
T  65069 acaaatgtatgtatgatt 65086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 272 - 346
Target Start/End: Original strand, 5078646 - 5078720
Alignment:
Q  272 tttggtgtcccaattcattgacatatatggtgggaagatgtttcaattgtaaggttttaggtgtaaatatcacaa 346  Q
    |||||||||||||||||||||| | |||||||||||||  | ||||||||||| |||||||||||||||||||||    
T  5078646 tttggtgtcccaattcattgacttctatggtgggaagacatctcaattgtaagtttttaggtgtaaatatcacaa 5078720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 131 - 213
Target Start/End: Complemental strand, 18682787 - 18682705
Alignment:
Q  131 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatattgtgatactgacagatggttcatcacaatctct 213  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||| | |||| || ||||||||| |||||||||||    
T  18682787 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatattttcataccgatagatggttcgtcacaatctct 18682705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 18650369 - 18650319
Alignment:
Q  131 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatatt 181  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  18650369 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatatt 18650319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 18718588 - 18718539
Alignment:
Q  131 catgtatgtatgattaatttgcttttaagagtacaagagtttgtacatat 180  Q
    ||||||||||||||||| |||||||||||| ||||||||| |||||||||    
T  18718588 catgtatgtatgattaaattgcttttaagaatacaagagtatgtacatat 18718539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 18692081 - 18692037
Alignment:
Q  165 aagagtttgtacatattgtgatactgacagatggttcatcacaat 209  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  18692081 aagagtttgtacatattttcataccgacagatggttcatcacaat 18692037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 946469 - 946412
Alignment:
Q  131 catgtatgtatgattaatttgcttttaagag-tacaagagtttgtacatattgtgata 187  Q
    ||||||||| ||||||  ||||||||||||| | |||||||||||||||||| |||||    
T  946469 catgtatgtgtgattagattgcttttaagagatgcaagagtttgtacatattttgata 946412  T

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