View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11245_low_2 (Length: 471)

Name: NF11245_low_2
Description: NF11245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11245_low_2
NF11245_low_2
[»] chr7 (5 HSPs)
chr7 (1-458)||(36464562-36465019)
chr7 (3-58)||(8414831-8414886)
chr7 (1-53)||(3051993-3052045)
chr7 (1-58)||(16535299-16535356)
chr7 (1-58)||(16630306-16630363)
[»] chr1 (4 HSPs)
chr1 (1-58)||(29833414-29833471)
chr1 (1-58)||(734917-734974)
chr1 (1-54)||(2416738-2416791)
chr1 (5-58)||(2404170-2404223)
[»] chr8 (3 HSPs)
chr8 (1-58)||(21268468-21268525)
chr8 (1-58)||(36379806-36379863)
chr8 (1-58)||(36377521-36377578)
[»] chr5 (4 HSPs)
chr5 (1-58)||(22600700-22600757)
chr5 (1-58)||(37207660-37207717)
chr5 (1-58)||(23164579-23164636)
chr5 (1-58)||(11850246-11850303)
[»] chr2 (3 HSPs)
chr2 (1-58)||(31488955-31489012)
chr2 (4-58)||(31486671-31486725)
chr2 (1-58)||(15729871-15729928)
[»] chr4 (1 HSPs)
chr4 (1-58)||(45166859-45166916)


Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 36464562 - 36465019
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattcttcttcatcatcgttgcttttattattcctgcttttgacggta 100  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464562 agacttccacattattctctagtattctagagtcttccatattatttttcatcattcttcttcatcatcgttgcttttattattcctgcttttgacggta 36464661  T
Q  101 tagtttcatggaagggagaggggtctcattcattttggagaaccagacctgagcattacgtactcatcaggtttttgatataggcgacaacgtttttaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464662 tagtttcatggaagggagaggggtctcattcattttggagcaccagacctgagcattacgtactcatcaggtttttgatataggcgacaacgtttttaaa 36464761  T
Q  201 cttccttttaggttcgcttagctaattctgttgattttaagattgttgataaggaagcacaagtagataggttcctctcaagagaatatggtcattttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464762 cttccttttaggttcgcttagctaattctgttgattttaagattgttgataaggaagcacaagtagataggttcctctcaagagaatatggtcattttca 36464861  T
Q  301 ttgggtatttgattgtgtgaatgaatgattaatttttccaacaaaagcttatatggtgggaagggaaggtaacttctaattctcttgtgttagtgaactt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464862 ttgggtatttgattgtgtgaatgaatgattaatttttccaacaaaagcttatatggtgggaagggaaggtaacttctaattctcttgtgttagtgaactt 36464961  T
Q  401 ccttatctatgttgaaatcgctataacccttatctatgtagacattgtaagtaatgat 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464962 ccttatctatgttgaaatcgctataacccttatctatgtagacattgtaagtaatgat 36465019  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 8414831 - 8414886
Alignment:
Q  3 acttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  8414831 acttccacattattctctagtattctagagtcttccatattattcttcatcattct 8414886  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3052045 - 3051993
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatc 53  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||| ||||||    
T  3052045 agacttcgacattattctctagtattctagagtcttccatattattcttcatc 3051993  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 16535299 - 16535356
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    |||||||||||||||||| |  |||||||||| ||||||||||||| || ||||||||    
T  16535299 agacttccacattattctttattattctagaggcttccatattattcttgatcattct 16535356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 16630363 - 16630306
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    |||||||||||||||||| |  |||||||||| ||||||||||||| || ||||||||    
T  16630363 agacttccacattattctttattattctagaggcttccatattattcttgatcattct 16630306  T

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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29833414 - 29833471
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||    
T  29833414 agacttccacattattctctagtattctagagtcttccatattattcttcatcattct 29833471  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 734917 - 734974
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||    
T  734917 agacttccacattattccctagtattctagagtcttccatattattcttcatcattct 734974  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2416738 - 2416791
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatca 54  Q
    ||||||||||||||||||||| ||| ||||||||||| || ||||| |||||||    
T  2416738 agacttccacattattctctggtatcctagagtcttctattttattcttcatca 2416791  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 2404170 - 2404223
Alignment:
Q  5 ttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||  ||| ||||||||||| || ||||| |||||||||||    
T  2404170 ttccacattattctctagtatcctagagtcttctattttattcttcatcattct 2404223  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21268468 - 21268525
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||    
T  21268468 agacttccacattattctctagtattctagagtcttccatattattcttcaccattct 21268525  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36379806 - 36379863
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| |||| ||||||    
T  36379806 agacttccacattattccctagtattctagagtcttccatattattcttcaccattct 36379863  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36377521 - 36377578
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    |||||||||||||||||  |  |||||||||||||||||||||||| |||| ||||||    
T  36377521 agacttccacattattccttagtattctagagtcttccatattattcttcaccattct 36377578  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22600757 - 22600700
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||    
T  22600757 agacttccacattattccctaatattctagagtcttccatattattcttcatcattct 22600700  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 37207717 - 37207660
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||    
T  37207717 agacttccacattattccctagtattctagagtcttccatattattcttcatcattct 37207660  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23164579 - 23164636
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| |||| ||||||    
T  23164579 agacttccacattattccctagtattctagagtcttccatattattcttcaccattct 23164636  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 11850246 - 11850303
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    |||||||||||||||||  |  ||||| |||||||||||||||||| |||| ||||||    
T  11850246 agacttccacattattccatagtattcaagagtcttccatattattcttcaccattct 11850303  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31489012 - 31488955
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| |||| ||||||    
T  31489012 agacttccacattattccctagtattctagagtcttccatattattcttcaccattct 31488955  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 31486725 - 31486671
Alignment:
Q  4 cttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    |||||||||||||| ||  |||||||||||||||||||||||| |||| ||||||    
T  31486725 cttccacattattccctagtattctagagtcttccatattattcttcaccattct 31486671  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15729928 - 15729871
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    |||||||||||||||||| |  | |||||||| | ||||||||||| |||||||||||    
T  15729928 agacttccacattattctttattgttctagagacatccatattattcttcatcattct 15729871  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 45166916 - 45166859
Alignment:
Q  1 agacttccacattattctctgctattctagagtcttccatattatttttcatcattct 58  Q
    ||||||||| ||||||||   | ||||||||| ||||||||||||| |||||||||||    
T  45166916 agacttccatattattcttcaccattctagagacttccatattattcttcatcattct 45166859  T

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