View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11246_low_1 (Length: 444)

Name: NF11246_low_1
Description: NF11246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11246_low_1
NF11246_low_1
[»] chr1 (11 HSPs)
chr1 (17-433)||(28664717-28665132)
chr1 (280-433)||(6696014-6696168)
chr1 (280-421)||(15630115-15630258)
chr1 (281-392)||(15629346-15629458)
chr1 (280-350)||(2073409-2073480)
chr1 (281-350)||(2071571-2071641)
chr1 (281-350)||(2075101-2075171)
chr1 (281-350)||(2076941-2077011)
chr1 (281-395)||(10354364-10354480)
chr1 (281-360)||(23825353-23825434)
chr1 (281-413)||(9168422-9168545)
[»] chr4 (7 HSPs)
chr4 (281-408)||(54146612-54146741)
chr4 (281-433)||(16871651-16871804)
chr4 (281-406)||(54148275-54148399)
chr4 (288-433)||(16869513-16869663)
chr4 (317-420)||(37945520-37945624)
chr4 (281-413)||(16543360-16543492)
chr4 (330-385)||(24131825-24131881)
[»] chr3 (9 HSPs)
chr3 (281-413)||(18088113-18088244)
chr3 (282-391)||(16462968-16463077)
chr3 (281-386)||(46691454-46691559)
chr3 (281-413)||(814364-814498)
chr3 (281-386)||(50294658-50294762)
chr3 (280-369)||(814259-814348)
chr3 (281-413)||(42531289-42531421)
chr3 (281-385)||(50297460-50297565)
chr3 (287-392)||(30057091-30057197)
[»] chr6 (13 HSPs)
chr6 (281-410)||(10741772-10741901)
chr6 (280-413)||(21862688-21862821)
chr6 (281-413)||(10740574-10740704)
chr6 (282-413)||(33423956-33424087)
chr6 (316-413)||(9290632-9290730)
chr6 (301-413)||(22868481-22868593)
chr6 (281-413)||(18984497-18984629)
chr6 (280-328)||(21858038-21858086)
chr6 (333-413)||(28062986-28063066)
chr6 (280-397)||(18792837-18792955)
chr6 (333-413)||(28064641-28064723)
chr6 (320-413)||(13166474-13166566)
chr6 (287-335)||(236584-236632)
[»] chr7 (14 HSPs)
chr7 (281-433)||(46963022-46963175)
chr7 (281-433)||(46964376-46964529)
chr7 (281-412)||(15614230-15614361)
chr7 (282-391)||(21814428-21814537)
chr7 (280-411)||(2628224-2628355)
chr7 (281-352)||(21811668-21811739)
chr7 (310-397)||(6840600-6840688)
chr7 (327-412)||(26403493-26403579)
chr7 (285-349)||(3902389-3902454)
chr7 (319-410)||(44337385-44337476)
chr7 (285-346)||(3889916-3889978)
chr7 (280-346)||(6841482-6841548)
chr7 (281-315)||(10414044-10414078)
chr7 (280-400)||(30867101-30867223)
[»] chr2 (7 HSPs)
chr2 (281-433)||(8986927-8987080)
chr2 (281-433)||(8985574-8985727)
chr2 (281-411)||(1172746-1172875)
chr2 (281-413)||(32291155-32291287)
chr2 (281-350)||(32276940-32277008)
chr2 (281-345)||(29409118-29409182)
chr2 (281-380)||(38583502-38583602)
[»] scaffold0325 (1 HSPs)
scaffold0325 (281-395)||(14522-14638)
[»] scaffold0002 (1 HSPs)
scaffold0002 (280-395)||(406241-406357)
[»] chr5 (6 HSPs)
chr5 (283-397)||(24137600-24137715)
chr5 (281-380)||(11320486-11320585)
chr5 (322-364)||(9512489-9512531)
chr5 (283-392)||(11343923-11344032)
chr5 (281-325)||(28993713-28993757)
chr5 (283-335)||(40784160-40784212)
[»] chr8 (7 HSPs)
chr8 (333-434)||(43516178-43516279)
chr8 (319-394)||(43414138-43414213)
chr8 (281-360)||(43615458-43615538)
chr8 (319-410)||(20241063-20241154)
chr8 (319-410)||(20251913-20252004)
chr8 (281-362)||(16578811-16578893)
chr8 (284-386)||(33199412-33199516)
[»] scaffold0511 (1 HSPs)
scaffold0511 (280-397)||(11186-11304)
[»] scaffold0007 (1 HSPs)
scaffold0007 (281-339)||(14306-14364)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 28664717 - 28665132
Alignment:
Q  17 attaatttggaacatatcataattttctcaaaaataaatccaaaccaaacttaagtgtgtgatcgagagattattgtttagtgcagaaaatagaatctat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28664717 attaatttggaacatatcataattttctcaaaaataaatccaaaccaaacttaagtgtgtgatcgagagattattgtttagtgcagaaaatagaatctat 28664816  T
Q  117 gaattcactctcatgaattaaggaatggtttgatgattatgtcgatagtaaggcaaacaagtttatgttttcagacaattgaacaatgcttgcctaagga 216  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28664817 gaattcactctcatgaattaaggaatgttttgttgattatgtcgatagtaaggcaaacaagtttatgttttcagacaattgaacaatgcttgcctaagga 28664916  T
Q  217 gttagaaatataatgattaaaaggaaggatgagatgtattttgtgatctcaaattgtttgttcttgttagataataaagtattgagcttaaact-----a 311  Q
    ||||||||||||||||||||||||||||||| ||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||     |    
T  28664917 gttagaaatataatgattaaaaggaaggatggga------ttgtgatctcaaattgtttgttcttgttagataataaagtattgagcttaaactattaga 28665010  T
Q  312 ttaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaatattaagctattgttattctaatgaaacccta 411  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28665011 ttagacctttatattagtaagttagagtccattaggtttattatatattctctcataacattttgtaatattaagctattgttattctaatgaaacccta 28665110  T
Q  412 gcggtcgtttttcctattctct 433  Q
    || |||||| ||||||||||||    
T  28665111 gccgtcgttgttcctattctct 28665132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 280 - 433
Target Start/End: Original strand, 6696014 - 6696168
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgta 378  Q
    ||||||||||||||||||||  ||||||  |||| ||| |||||||||||||||||||||||||||| ||| |||| ||||||||| ||||  |||||||    
T  6696014 ttgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattaaatattctcttataaccttttgta 6696113  T
Q  379 atattaagctattgttattctaatgaaaccctagcggtcgtttttcctattctct 433  Q
    || |||||||||||||| |||||||||| | |||| |||||| ||||||||||||    
T  6696114 atgttaagctattgttagtctaatgaaatcgtagccgtcgttgttcctattctct 6696168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 280 - 421
Target Start/End: Complemental strand, 15630258 - 15630115
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgta 378  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||  ||||| |    
T  15630258 ttgttaaataataaagtattgagcttaaattattgggcctttatattagtaagttagagtctattaggttttattatatattctcttataaccttttgga 15630159  T
Q  379 atattaagctattgttat-tctaatgaaaccctagcggtcgttt 421  Q
    |||||||| |||||  || | | ||||||||||||| |||||||    
T  15630158 atattaagttattgaaatattttatgaaaccctagccgtcgttt 15630115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 281 - 392
Target Start/End: Complemental strand, 15629458 - 15629346
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattag-gtttattatatattctctcataaaattttgtaa 379  Q
    |||||||||||||| ||||| ||||||  |||| | ||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||  ||||||||    
T  15629458 tgttagataataaaatattgggcttaagttattggacctttatattagtaagttagagttcattagattttattatatattctcttataaccttttgtaa 15629359  T
Q  380 tattaagctattg 392  Q
    |||||||||||||    
T  15629358 tattaagctattg 15629346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 2073480 - 2073409
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttag-agtccattaggttt 350  Q
    ||||||||||||||| ||||| |||||| ||||||| |||| ||||||||||||||| ||||||||||||||    
T  2073480 ttgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttt 2073409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 2071641 - 2071571
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttag-agtccattaggttt 350  Q
    |||||||||||||| ||||| |||||| ||||| |||||| ||||||||||||||| ||||||||||||||    
T  2071641 tgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggttt 2071571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 2075171 - 2075101
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttag-agtccattaggttt 350  Q
    |||||||||||||| ||||| |||||| ||||| |||||| ||||||||||||||| ||||||||||||||    
T  2075171 tgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggttt 2075101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 2077011 - 2076941
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttag-agtccattaggttt 350  Q
    |||||||||||||| ||||| |||||| ||||||| |||| ||||||||||||||| ||||||||||||||    
T  2077011 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttt 2076941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 395
Target Start/End: Original strand, 10354364 - 10354480
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttat-attagtaagttag-agtccattaggtttattatatattctctcataaaattttgta 378  Q
    |||||||| ||||| ||||   ||||| ||||||||||||||| |||| |||||||| |||| ||||| |||  |||||||||||| ||||| ||||| |    
T  10354364 tgttagatgataaaatattagacttaagctattaggcctttatcattactaagttagtagtctattagattttatatatattctcttataaacttttgca 10354463  T
Q  379 atattaagctattgtta 395  Q
    |||||| ||||||||||    
T  10354464 atattacgctattgtta 10354480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 23825353 - 23825434
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttag-agtccattaggtt-tattatatatt 360  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||| | |||||| ||| ||||| ||| |||||||||||    
T  23825353 tgttagataataaagtatttaacttaaactattgggcctttatattattgagttagcagttcattatgttctattatatatt 23825434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 9168545 - 9168422
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaat 380  Q
    ||||||||||||||||||||  ||||| |||||   ||||||||| ||||||||| |||        ||||||||||||||||| |||| ||||||| ||    
T  9168545 tgttagataataaagtattgcacttaagctattgaacctttatatcagtaagttacagt--------tttattatatattctcttataacattttgtgat 9168454  T
Q  381 attaagctattgttattctaatgaaaccctagc 413  Q
    || ||| ||||| |||| | |||||||||||||    
T  9168453 atcaagttattgatatt-ttatgaaaccctagc 9168422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 281 - 408
Target Start/End: Original strand, 54146612 - 54146741
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggc--ctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgta 378  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  54146612 tgttagataataaagtattaagcttaaactattaggcgcctttatattagtaagttagagtccattagatttatcatatattctctcataacattttgta 54146711  T
Q  379 atattaagctattgttattctaatgaaacc 408  Q
    |||||||||||||| |||| ||||||||||    
T  54146712 atattaagctattgatattttaatgaaacc 54146741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 281 - 433
Target Start/End: Original strand, 16871651 - 16871804
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaa 379  Q
    |||||||||||||||||||  ||||||  |||| ||| |||||||||||||||||||||||||||| ||| |||||||||| ||| ||||  ||||||||    
T  16871651 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattatatattatcttataaccttttgtaa 16871750  T
Q  380 tattaagctattgttattctaatgaaaccctagcggtcgtttttcctattctct 433  Q
    | |||||||||||||| ||||||||||||||||| |||||| ||| | ||||||    
T  16871751 tgttaagctattgttagtctaatgaaaccctagccgtcgttgttcttgttctct 16871804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 281 - 406
Target Start/End: Original strand, 54148275 - 54148399
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaat 380  Q
    |||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| | |||||| |    
T  54148275 tgttagataacaaagcattgagcttaagctattaggcttttatattagtaagttagagtccaatagatttattatatattctctcataaca-tttgtatt 54148373  T
Q  381 attaagctattgttattctaatgaaa 406  Q
    |||||||||||| |||| ||| ||||    
T  54148374 attaagctattgatattttaacgaaa 54148399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 433
Target Start/End: Original strand, 16869513 - 16869663
Alignment:
Q  288 taataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattag-gtttattatatattctctcataaaatt----ttgtaatat 382  Q
    ||||||||||||||||||||  |||| ||| ||||||||||||||||||||| ||||||  ||||||||||| ||||| ||||  ||    ||||||  |    
T  16869513 taataaagtattgagcttaagttattgggcttttatattagtaagttagagttcattagattttattatatactctcttataacttttttgttgtaacgt 16869612  T
Q  383 taagctattgttattctaatgaaaccctagcggtcgtttttcctattctct 433  Q
    ||||||||||||||| |||||||| | |||| |||||| ||||||||||||    
T  16869613 taagctattgttattataatgaaatcgtagccgtcgttgttcctattctct 16869663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 420
Target Start/End: Original strand, 37945520 - 37945624
Alignment:
Q  317 cctttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaatattaagctattgttattctaatgaaaccctagcgg 415  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||||| ||||  ||||||||| |||| | |||| |||| ||||||||| ||||| |    
T  37945520 cctttatattagtaagttagagtccattaaattttattatatattctcttataaccttttgtaatgttaatcaattgatattttaatgaaactctagctg 37945619  T
Q  416 tcgtt 420  Q
    |||||    
T  37945620 tcgtt 37945624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 16543360 - 16543492
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccatt-aggtttattatatattctctcataaaattttgtaa 379  Q
    ||||||||||||||||| ||  |||||  |||| | | ||||||||||||||||||||| |||| || ||||||||||||||||   |||  ||||| ||    
T  16543360 tgttagataataaagtaatggacttaagttattggccttttatattagtaagttagagttcattaagttttattatatattctcatgtaaccttttgcaa 16543459  T
Q  380 tattaagctattgttattctaatgaaaccctagc 413  Q
    | ||||| ||||| |||||| |||||||||||||    
T  16543460 tgttaaggtattgatattct-atgaaaccctagc 16543492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 24131825 - 24131881
Alignment:
Q  330 aagttagagtccattagg-tttattatatattctctcataaaattttgtaatattaa 385  Q
    |||||||||||||||||| |||||||||| |||||| |||| |||||||||| ||||    
T  24131825 aagttagagtccattaggttttattatatgttctcttataacattttgtaatgttaa 24131881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 18088244 - 18088113
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaat 380  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18088244 tgttggataataaagtattgggcttaagctattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataacattttgtaat 18088145  T
Q  381 attaagctattgttattctaatgaaaccctagc 413  Q
    |  |||||||||  ||||| |||||||||||||    
T  18088144 agcaagctattgacattct-atgaaaccctagc 18088113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 16462968 - 16463077
Alignment:
Q  282 gttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaata 381  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||     
T  16462968 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattaggtttattatatattctctaatattcttttgtaatg 16463067  T
Q  382 ttaagctatt 391  Q
    |||| |||||    
T  16463068 ttaatctatt 16463077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 281 - 386
Target Start/End: Complemental strand, 46691559 - 46691454
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaat 380  Q
    ||||||||||||||||||||| |||||  |||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||  |||||||||    
T  46691559 tgttagataataaagtattgaacttaagttattggacctttatactagtaagttagagtccattagttttattatatattctcttataaccttttgtaat 46691460  T
Q  381 attaag 386  Q
     |||||    
T  46691459 gttaag 46691454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 281 - 413
Target Start/End: Complemental strand, 814498 - 814364
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtt---tattatatattctctcataaaattttgt 377  Q
    ||||||||||||||||||||  |||||  |||| ||| |||||||||||||||||||||||||||||||   |  |||||||||||| ||||  | ||||    
T  814498 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgttatatatattctcttataacctcttgt 814399  T
Q  378 aatattaagctattgttattctaatgaaaccctagc 413  Q
    ||| ||||||||||| |||||| ||||||| |||||    
T  814398 aatgttaagctattggtattct-atgaaactctagc 814364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 281 - 386
Target Start/End: Original strand, 50294658 - 50294762
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgtaa 379  Q
    |||||||| ||||||||||| ||||||  |||| | ||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||| |||||||||    
T  50294658 tgttagatgataaagtattg-gcttaagttatt-gacctttatattaataagttagagtccattaggttttattatatattatcttataacattttgtaa 50294755  T
Q  380 tattaag 386  Q
    |||||||    
T  50294756 tattaag 50294762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 814259 - 814348
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataa 369  Q
    |||||||||||||||||||||  |||||  |||| ||| ||||||||||||||||||||||||||||||||  | |||||||||| ||||    
T  814259 ttgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgtttatattctcttataa 814348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 42531289 - 42531421
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgtaa 379  Q
    ||||||||||||||| |||| |||| |  |||| | | ||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||  ||||||||    
T  42531289 tgttagataataaaggattgggcttgagttattggacttttatattagtaagttaaagttcattaggttttattatatattctcttataaccttttgtaa 42531388  T
Q  380 tattaagctattgttattctaatgaaaccctagc 413  Q
    | |||||| |||| |||| | |||||||||||||    
T  42531389 tgttaagccattgatattgt-atgaaaccctagc 42531421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 385
Target Start/End: Original strand, 50297460 - 50297565
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccatta-ggtttattatatattctctcataaaattttgtaa 379  Q
    |||||||||||||||||||| ||||||  ||||  | |||||||||||||||||||||| ||||| | |||||||||| ||| || ||||  ||||||||    
T  50297460 tgttagataataaagtattgtgcttaagttattgagtctttatattagtaagttagagttcattatgttttattatatgttcacttataaccttttgtaa 50297559  T
Q  380 tattaa 385  Q
    | ||||    
T  50297560 tgttaa 50297565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 392
Target Start/End: Original strand, 30057091 - 30057197
Alignment:
Q  287 ataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggttta-ttatatattctctcataaaattttgtaatattaa 385  Q
    ||||||||||||| | || ||  |||| ||| ||||||||  |||||||||||||||||| |||  ||||||||||||| ||||  ||||||||| ||||    
T  30057091 ataataaagtattaaactcaagttattgggcatttatattcataagttagagtccattagattttgttatatattctcttataatcttttgtaatgttaa 30057190  T
Q  386 gctattg 392  Q
    |||||||    
T  30057191 gctattg 30057197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 281 - 410
Target Start/End: Original strand, 10741772 - 10741901
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaat 380  Q
    |||||||||||||| ||||| ||||||  |||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  10741772 tgttagataataaaatattgggcttaagttattgggtctttatattagaaagttagagtccattagatttattatatattctctcataacattttgtaat 10741871  T
Q  381 attaagctattgttattctaatgaaaccct 410  Q
    ||||||| |||| ||||||| |||||||||    
T  10741872 attaagcaattgatattctattgaaaccct 10741901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 413
Target Start/End: Original strand, 21862688 - 21862821
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgta 378  Q
    |||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||| ||||||| |||||||||||||||||  |||   ||||||    
T  21862688 ttgttagataataaagtattgagcttaagctattgggtctttatattagcaagttagagtgcattaggttttattatatattctctagtaactctttgta 21862787  T
Q  379 atattaagctattgttattctaatgaaaccctagc 413  Q
    ||||||||| ||||||||||| |||||||||||||    
T  21862788 atattaagcaattgttattct-atgaaaccctagc 21862821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 10740574 - 10740704
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaat 380  Q
    |||||||||||||| ||||| ||||||  ||||  | ||||||||||| || ||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  10740574 tgttagataataaaatattgggcttaagttatt--gtctttatattagcaaattagagtccattacgtttattatatattctctcataacattttgtaat 10740671  T
Q  381 attaagctattgttattctaatgaaaccctagc 413  Q
    |||||| ||||| ||||||| ||||||||||||    
T  10740672 attaagttattgatattctattgaaaccctagc 10740704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 282 - 413
Target Start/End: Complemental strand, 33424087 - 33423956
Alignment:
Q  282 gttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgtaat 380  Q
    ||||||||||||||||||||||||||  ||||  | |||||||||||||||||| ||| ||||||| |||||||||||||||| |||||   ||||||||    
T  33424087 gttagataataaagtattgagcttaagttattgcgtctttatattagtaagttaaagttcattaggttttattatatattctcccataaccctttgtaat 33423988  T
Q  381 attaagctattgttattctaatgaaaccctagc 413  Q
     || ||||||||||||||| | |||||||||||    
T  33423987 gttgagctattgttattct-acgaaaccctagc 33423956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 9290730 - 9290632
Alignment:
Q  316 gcctttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaatattaagctattgttattctaatgaaaccctagc 413  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| ||||  ||||||||| |||  | |||||||||||||||||||||||||    
T  9290730 gcctttatattaataagttagagtccattaggttttattatatattctcttataaccttttgtaatgttagacaattgttattctaatgaaaccctagc 9290632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 413
Target Start/End: Original strand, 22868481 - 22868593
Alignment:
Q  301 agcttaaactattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgtaatattaagctattgttattct 399  Q
    |||||| | |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||||| ||| ||||||| ||||||    
T  22868481 agcttagattattgggcttttatattagtaagttagagtccattaggttttattatatattctcttataactttttgtaatgttatgctattgatattct 22868580  T
Q  400 aatgaaaccctagc 413  Q
     |||||||||||||    
T  22868581 -atgaaaccctagc 22868593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 18984497 - 18984629
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccatta-ggtttattatatattctctcataaaattttgtaa 379  Q
    ||||| |||||||| ||||| ||||| | |||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||| ||||  ||| ||||    
T  18984497 tgttaaataataaaatattgggcttagattattgggcctttatattagtaagttagagtacattatgttttattatatattctcttataacctttagtaa 18984596  T
Q  380 tattaagctattgttattctaatgaaaccctagc 413  Q
    |   | |||||||||||| | |||||||||||||    
T  18984597 tgcaatgctattgttatt-ttatgaaaccctagc 18984629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 21858038 - 21858086
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattag 328  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||    
T  21858038 ttgttagataataaagtattgagcttaagctattgggtctttatattag 21858086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 28063066 - 28062986
Alignment:
Q  333 ttagagtccattaggtttattatatattctctcataaaattttgtaatattaagctattgttattctaatgaaaccctagc 413  Q
    |||||||||||||| |||  ||||||||||||  |||  ||||||||| |||||||||||||| ||  |||||||||||||    
T  28063066 ttagagtccattagattttatatatattctctagtaaccttttgtaatgttaagctattgttaatcatatgaaaccctagc 28062986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 397
Target Start/End: Complemental strand, 18792955 - 18792837
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccatt-aggtttattatatattctctcataaaattttgta 378  Q
    ||||||||||||||| ||||| |||| |  ||||  |||  ||||||||||||||| ||| |||| || |||||| |||||||||| ||||  |||||||    
T  18792955 ttgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctcttataaccttttgta 18792856  T
Q  379 atattaagctattgttatt 397  Q
    || |||| |||||| ||||    
T  18792855 atgttaaactattgatatt 18792837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 28064723 - 28064641
Alignment:
Q  333 ttagagtccattaggtttattat--atattctctcataaaattttgtaatattaagctattgttattctaatgaaaccctagc 413  Q
    ||||||||||||||||||  |||  |||||||||  |||  ||||||||| |||||||||||||| ||  |||||||||||||    
T  28064723 ttagagtccattaggttttatatttatattctctagtaaccttttgtaatgttaagctattgttaatcatatgaaaccctagc 28064641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 413
Target Start/End: Original strand, 13166474 - 13166566
Alignment:
Q  320 ttatattagtaagttagagtccattaggt-ttattatatattctctcataaaattttgtaatattaagctattgttattctaatgaaaccctagc 413  Q
    ||||||||  |||||||||| ||||| || |||||||||||||||||||||  |||| |||| |||||| |||| |||| | |||||||||||||    
T  13166474 ttatattaacaagttagagttcattaagtgttattatatattctctcataacctttt-taatgttaagccattgatatt-ttatgaaaccctagc 13166566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 236584 - 236632
Alignment:
Q  287 ataataaagtattgagcttaaactattaggcctttatattagtaagtta 335  Q
    |||||||||||||||||||||  |||| || |||||||||| |||||||    
T  236584 ataataaagtattgagcttaagttattgggtctttatattactaagtta 236632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 281 - 433
Target Start/End: Complemental strand, 46963175 - 46963022
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaa 379  Q
    |||||||||||||||||||  ||||||  |||| ||| |||||||||||||||||||||||||||| ||| |||| ||||||||| ||||  ||||||||    
T  46963175 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattagatattctcttataaccttttgtaa 46963076  T
Q  380 tattaagctattgttattctaatgaaaccctagcggtcgtttttcctattctct 433  Q
    | |||||||||||||||| |||||||| | |||| |||||| ||||||||||||    
T  46963075 tgttaagctattgttattataatgaaatcgtagccgtcgttgttcctattctct 46963022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 281 - 433
Target Start/End: Complemental strand, 46964529 - 46964376
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaa 379  Q
    ||||||||||||||| |||  ||||||  |||| ||| |||||||||||| ||||||||||||||| ||| |||||||||||||| ||||  ||||||||    
T  46964529 tgttagataataaaggattaggcttaagttattgggcatttatattagtacgttagagtccattagattttattatatattctcttataactttttgtaa 46964430  T
Q  380 tattaagctattgttattctaatgaaaccctagcggtcgtttttcctattctct 433  Q
    |||||||||||||||| |||||||||| | |||| |||||| ||||||||||||    
T  46964429 tattaagctattgttagtctaatgaaatcgtagccgtcgttgttcctattctct 46964376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 281 - 412
Target Start/End: Complemental strand, 15614361 - 15614230
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgtaa 379  Q
    |||||||||||||||||||| ||||||  |||| | |||||||||||| |||||||||||||||||| ||||||||||||||| | ||||  ||||||||    
T  15614361 tgttagataataaagtattgggcttaagttattggacctttatattagcaagttagagtccattaggttttattatatattcttttataaccttttgtaa 15614262  T
Q  380 tattaagctattgttattctaatgaaaccctag 412  Q
    |||||||||||||||||||| ||||||||||||    
T  15614261 tattaagctattgttattct-atgaaaccctag 15614230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 21814428 - 21814537
Alignment:
Q  282 gttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaata 381  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||||     
T  21814428 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattaggtttattatatattctctaatattcttttgtaatg 21814527  T
Q  382 ttaagctatt 391  Q
    |||| |||||    
T  21814528 ttaatctatt 21814537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 280 - 411
Target Start/End: Complemental strand, 2628355 - 2628224
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgta 378  Q
    ||||||||||||||||||||||||||||  ||||  | |||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  2628355 ttgttagataataaagtattgagcttaagttattgagtctttatattagtaagttagagtccattaggttttattatatattctctcataattttttgta 2628256  T
Q  379 atattaagctattgttattctaatgaaacccta 411  Q
    || |||| |||||| |||| | |||||||||||    
T  2628255 atgttaaactattgatattat-atgaaacccta 2628224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 21811668 - 21811739
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttat 352  Q
    ||||||||||||| |||||| | |||| |||||||||||||||||||||||||||||||| |||||||||||    
T  21811668 tgttagataataatgtattgggtttaagctattaggcctttatattagtaagttagagtcaattaggtttat 21811739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 397
Target Start/End: Complemental strand, 6840688 - 6840600
Alignment:
Q  310 tattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgtaatattaagctattgttatt 397  Q
    |||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||| | ||||  ||||||||| | ||||||||| ||||    
T  6840688 tattgggcctttatatcagtaagttagagtccgttaggttttattatatattcttttataaccttttgtaatgtaaagctattgatatt 6840600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 327 - 412
Target Start/End: Original strand, 26403493 - 26403579
Alignment:
Q  327 agtaagttagagtccattaggttt-attatatattctctcataaaattttgtaatattaagctattgttattctaatgaaaccctag 412  Q
    |||||||||||| | ||||| ||| |||||||||||||| ||||  ||||||||| ||| ||||||||||||||| ||||| |||||    
T  26403493 agtaagttagagccgattagattttattatatattctcttataactttttgtaatgttatgctattgttattctattgaaatcctag 26403579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 3902389 - 3902454
Alignment:
Q  285 agataataaagtattgagcttaaactattaggcctttatattagtaagttag-agtccattaggtt 349  Q
    |||||||||||||||||||||||  |||| || |||||||||| ||| |||| |||||||||||||    
T  3902389 agataataaagtattgagcttaatttattgggactttatattactaaattagcagtccattaggtt 3902454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 410
Target Start/End: Original strand, 44337385 - 44337476
Alignment:
Q  319 tttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaatattaagctattgttattctaatgaaaccct 410  Q
    |||||| |||||||||||||||| |||| ||| |||||||||||||| |||| |||| |||||   | |||||||||||| | ||||||||||    
T  44337385 tttatagtagtaagttagagtccgttagattttattatatattctcttataacatttagtaatgcaatgctattgttatt-ttatgaaaccct 44337476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 3889916 - 3889978
Alignment:
Q  285 agataataaagtattgagcttaaactattaggcctttatattagtaagttag-agtccattag 346  Q
    |||||||||||||||||||||||  |||| || |||||||||  |||||||| ||||||||||    
T  3889916 agataataaagtattgagcttaatttattgggactttatattgctaagttagcagtccattag 3889978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 6841548 - 6841482
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattag 346  Q
    ||||||||||||||| ||| |  |||||  |||| ||||||||||| ||||||||||||||| ||||    
T  6841548 ttgttagataataaaatatcggacttaagttattgggcctttatatcagtaagttagagtccgttag 6841482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 315
Target Start/End: Original strand, 10414044 - 10414078
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattag 315  Q
    |||||||||||||||||||||| ||||||||||||    
T  10414044 tgttagataataaagtattgagtttaaactattag 10414078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 400
Target Start/End: Original strand, 30867101 - 30867223
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagt---tagagtccattaggtttattatatattctctcataaaattttg 376  Q
    |||||||||||||||||||||| ||||||||||    ||||| ||||| | |||   || ||| ||||||||||  ||||||||||||  | |  |||||    
T  30867101 ttgttagataataaagtattgaccttaaactatcgaccctttgtattacttagttaatatagttcattaggttt-ctatatattctcttgtgactttttg 30867199  T
Q  377 taatattaagctattgttattcta 400  Q
    |||||||||| ||||| |||||||    
T  30867200 taatattaagttattgatattcta 30867223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 281 - 433
Target Start/End: Original strand, 8986927 - 8987080
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaa 379  Q
    |||||||||||||||||||  ||||||  |||| ||| |||||||||||||||||||||||||||  ||| |||||||||||||| ||||  ||||||||    
T  8986927 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattaaattttattatatattctcttataaccttttgtaa 8987026  T
Q  380 tattaagctattgttattctaatgaaaccctagcggtcgtttttcctattctct 433  Q
    | |||||||||||||| |||||||||| | |||| |||||| ||||||||||||    
T  8987027 tgttaagctattgttagtctaatgaaatcgtagccgtcgttgttcctattctct 8987080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 281 - 433
Target Start/End: Original strand, 8985574 - 8985727
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaa 379  Q
    |||||||||||||||||||  ||||||  |||| | | ||||||||||||||||| |||||||||| ||| |||||||||||||| ||||  ||||||||    
T  8985574 tgttagataataaagtattaggcttaagttattggacatttatattagtaagttaaagtccattagattttattatatattctcttataaccttttgtaa 8985673  T
Q  380 tattaagctattgttattctaatgaaaccctagcggtcgtttttcctattctct 433  Q
    | |||||||||||||| |||||||||| | |||| |||||| ||||||||||||    
T  8985674 tgttaagctattgttagtctaatgaaatcgtagccgtcgttgttcctattctct 8985727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 281 - 411
Target Start/End: Complemental strand, 1172875 - 1172746
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaat 380  Q
    ||||||||||||||||||||  |||||||||||||||||| |||||| ||| |||||||||||| | |||||||||||||||||||||| ||||| ||||    
T  1172875 tgttagataataaagtattgtacttaaactattaggccttaatattaataaattagagtccattcgatttattatatattctctcataacattttataat 1172776  T
Q  381 attaagctattgttattctaatgaaacccta 411  Q
    ||| | |||||  |||||| |||||||||||    
T  1172775 attgatctattagtattct-atgaaacccta 1172746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 281 - 413
Target Start/End: Original strand, 32291155 - 32291287
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccatt-aggtttattatatattctctcataaaattttgtaa 379  Q
    |||||||||||||||||||||||||||  ||||  | ||||||||||||||||||||||||||| || ||||||||||||||||| ||||  ||||||||    
T  32291155 tgttagataataaagtattgagcttaagttattgtgtctttatattagtaagttagagtccattaagatttattatatattctcttataaccttttgtaa 32291254  T
Q  380 tattaagctattgttattctaatgaaaccctagc 413  Q
    |   |||| |||| |||||| |||||||| ||||    
T  32291255 tgaaaagcaattgatattct-atgaaaccatagc 32291287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 32276940 - 32277008
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggttt 350  Q
    ||||||||||| | |||||||||||||  |||| | ||||||||||||||||||||||||||||||||||    
T  32276940 tgttagataatta-gtattgagcttaagttattggacctttatattagtaagttagagtccattaggttt 32277008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 29409182 - 29409118
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccatta 345  Q
    |||||||||||||||||||| |||||| |||||  || ||||| |||||||||||||||||||||    
T  29409182 tgttagataataaagtattgtgcttaagctattgagcatttattttagtaagttagagtccatta 29409118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 380
Target Start/End: Complemental strand, 38583602 - 38583502
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattag-gtttattatatattctctcataaaattttgtaa 379  Q
    |||||||||||||| ||||  ||||||| |||| |||||||||||||||||||||||  || ||||  |||||||||||||| || ||||  ||||||||    
T  38583602 tgttagataataaaatattaggcttaaattattgggcctttatattagtaagttagaacccgttagattttattatatattcgcttataaccttttgtaa 38583503  T
Q  380 t 380  Q
    |    
T  38583502 t 38583502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 281 - 395
Target Start/End: Complemental strand, 14638 - 14522
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttat-attagtaagtt-agagtccattaggtttattatatattctctcataaaattttgta 378  Q
    |||||||||||||||||||| |||||| ||||| ||||||||| |||| |||||| | ||||  ||||||||  |||||||||||| ||||  |||||||    
T  14638 tgttagataataaagtattgggcttaagctattgggcctttatcattactaagttcatagtctgttaggttttatatatattctcttataaccttttgta 14539  T
Q  379 atattaagctattgtta 395  Q
     ||||||||||||||||    
T  14538 gtattaagctattgtta 14522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 280 - 395
Target Start/End: Complemental strand, 406357 - 406241
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccatt-aggtttattatatattctctcataaaattttgta 378  Q
    ||||||||||||||||||||  | ||||  |||| |||||||||||||| |||||||||||| || || ||||||||||||||| | ||||  |||| ||    
T  406357 ttgttagataataaagtattaggtttaagttattgggcctttatattagcaagttagagtcctttaagttttattatatattctattataaccttttcta 406258  T
Q  379 atattaagctattgtta 395  Q
    |||||||| ||||||||    
T  406257 atattaagttattgtta 406241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 283 - 397
Target Start/End: Original strand, 24137600 - 24137715
Alignment:
Q  283 ttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataaaattttgtaata 381  Q
    ||||| ||||||||||||||||| |  |||| |||||||| | ||||||||||||||| |||||| ||||||||||||||||| ||||  || ||||||     
T  24137600 ttagacaataaagtattgagcttcagttattgggcctttacactagtaagttagagtctattaggttttattatatattctcttataaccttctgtaatg 24137699  T
Q  382 ttaagctattgttatt 397  Q
    |||||| |||| ||||    
T  24137700 ttaagcaattgatatt 24137715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 380
Target Start/End: Complemental strand, 11320585 - 11320486
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaat 380  Q
    ||||||||||||| |||||   |||||  |||| |  ||||||||||||||||| ||||||||||  ||||||||||||||||| ||||  |||||||||    
T  11320585 tgttagataataatgtattagacttaagttattggctctttatattagtaagttggagtccattaattttattatatattctcttataaccttttgtaat 11320486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 9512489 - 9512531
Alignment:
Q  322 atattagtaagttagagtccattaggtttattatatattctct 364  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  9512489 atattagtaaattagagtccattaggtttattatatattctct 9512531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 283 - 392
Target Start/End: Complemental strand, 11344032 - 11343923
Alignment:
Q  283 ttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattaggtttattatatattctctcataa-aattttgtaata 381  Q
    |||||||||||||||||| ||||||  |||| |   ||||||||||||||||||||||  | || ||||||||||| ||||| |||| | |||||||||     
T  11344032 ttagataataaagtattgggcttaat-tattggctatttatattagtaagttagagtcattaagttttattatatactctcttataacatttttgtaatg 11343934  T
Q  382 ttaagctattg 392  Q
    |||||||||||    
T  11343933 ttaagctattg 11343923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 28993713 - 28993757
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatat 325  Q
    |||||||||||||| |||||| ||||| ||||||||| |||||||    
T  28993713 tgttagataataaaatattgaacttaatctattaggcatttatat 28993757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 335
Target Start/End: Original strand, 40784160 - 40784212
Alignment:
Q  283 ttagataataaagtattgagcttaaactattaggcctttatattagtaagtta 335  Q
    ||||||||||||||| ||| ||||| |||||  |||||||||||| |||||||    
T  40784160 ttagataataaagtactgaacttaatctattgagcctttatattattaagtta 40784212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 434
Target Start/End: Original strand, 43516178 - 43516279
Alignment:
Q  333 ttagagtccattaggtttattatatattctctcataaaattttgtaatattaagctattgttattctaatgaaaccctagcggtcgtttttcctattctc 432  Q
    ||||||||||||||||||  ||||||||||||  |||  || |||||| |||||||| || ||||||| |||||||||||| ||| || |||||||||||    
T  43516178 ttagagtccattaggttttatatatattctctagtaaccttatgtaatgttaagctaatggtattctattgaaaccctagccgtcattgttcctattctc 43516277  T
Q  433 tg 434  Q
    ||    
T  43516278 tg 43516279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 394
Target Start/End: Original strand, 43414138 - 43414213
Alignment:
Q  319 tttatattagtaagttagagtccattaggtttattatatattctctcataaaattttgtaatattaagctattgtt 394  Q
    ||||||||| |||||||||||||  ||  ||||||||||||||||||||||  |||||||||||| | ||||||||    
T  43414138 tttatattaataagttagagtccgctaaatttattatatattctctcataaccttttgtaatattcaactattgtt 43414213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 360
Target Start/End: Original strand, 43615458 - 43615538
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccattag-gtttattatatatt 360  Q
    |||||||||||||| |||||| ||| |  ||||  || ||||||||||||||||||||||||||||  |||||||||||||    
T  43615458 tgttagataataaaatattgaactttagttattgagcttttatattagtaagttagagtccattagattttattatatatt 43615538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 410
Target Start/End: Original strand, 20241063 - 20241154
Alignment:
Q  319 tttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaatattaagctattgttattctaatgaaaccct 410  Q
    |||||| |||||||||||||||| |||| ||| |||||||||||||| |||| |||| |||||   | |||||||||||| | ||||||||||    
T  20241063 tttatagtagtaagttagagtccgttagattttattatatattctcttataacatttagtaatgcaatgctattgttatt-ttatgaaaccct 20241154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 410
Target Start/End: Complemental strand, 20252004 - 20251913
Alignment:
Q  319 tttatattagtaagttagagtccattaggttt-attatatattctctcataaaattttgtaatattaagctattgttattctaatgaaaccct 410  Q
    |||||| |||||||||||||||| |||| ||| |||||||||||||| |||| |||| |||||   | |||||||||||| | ||||||||||    
T  20252004 tttatagtagtaagttagagtccgttagattttattatatattctcttataacatttagtaatgcaatgctattgttatt-ttatgaaaccct 20251913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 16578893 - 16578811
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttag-agtccattaggtttattatatattct 362  Q
    ||||||||||||||||||| | ||| ||| |||   ||||||||||| |||||||| |||||||||| |||  ||||||||||    
T  16578893 tgttagataataaagtattaatcttcaaccattgaacctttatattactaagttagcagtccattagattttatatatattct 16578811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 33199412 - 33199516
Alignment:
Q  284 tagataataaagtattgagcttaaactattaggcctttatattagtaagttagagt-ccattagg-tttattatatattctctcataaaattttgtaata 381  Q
    |||||||||||||||||| |||||  ||||  || ||||||||||||||| |||||   |||||| |||||||||||||  || ||||  |||||||||     
T  33199412 tagataataaagtattgatcttaagttattgagcttttatattagtaagtcagagtataattaggttttattatatatttccttataatcttttgtaatg 33199511  T
Q  382 ttaag 386  Q
    |||||    
T  33199512 ttaag 33199516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 397
Target Start/End: Original strand, 11186 - 11304
Alignment:
Q  280 ttgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagtccatt-aggtttattatatattctctcataaaattttgta 378  Q
    ||||||||||||||| ||||| |||| |  ||||  |||  ||||||||||||||| ||| |||| || |||||| |||||||||| ||||  |||||||    
T  11186 ttgttagataataaactattgggcttcagttattgagccaatatattagtaagttaaagtgcattaagttttattgtatattctcttataaccttttgta 11285  T
Q  379 atattaagctattgttatt 397  Q
    || |||| |||||| ||||    
T  11286 atgttaaactattgatatt 11304  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 14364 - 14306
Alignment:
Q  281 tgttagataataaagtattgagcttaaactattaggcctttatattagtaagttagagt 339  Q
    ||||| |||||||| ||||| ||||||| |||  |||||||||||||||||||||||||    
T  14364 tgttaaataataaaatattgggcttaaattatggggcctttatattagtaagttagagt 14306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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