View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11246_low_3 (Length: 349)
Name: NF11246_low_3
Description: NF11246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11246_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 4265958 - 4265630
Alignment:
| Q |
1 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265958 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
4265859 |
T |
|
| Q |
101 |
aataccaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatga |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
4265858 |
aataccaattgaaaatccatagtttggaaaaagagtaacttgaagagccaaaatagaagcttgatcatgagaaatattcaagttaggtaaaagatcatga |
4265759 |
T |
|
| Q |
201 |
atttgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttcccttaatgaatttga |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
4265758 |
atttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagggtttcccttgatgaatttga |
4265659 |
T |
|
| Q |
301 |
tgattggcttgtgagaatcatgaggccaa |
329 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
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| T |
4265658 |
tgattggcttgtgagaatcattaggccaa |
4265630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 4260412 - 4260082
Alignment:
| Q |
1 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4260412 |
ctaattcagatacttcaatttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
4260313 |
T |
|
| Q |
101 |
aataccaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||||| |
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| T |
4260312 |
aataccaattgaaaatccatagtttggaaaaaaagtaacttgaagagccaaaaaagaagcttgatcatgagaaatattcaagttaggtaaaaaatcatga |
4260213 |
T |
|
| Q |
201 |
atttgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttcccttaatgaatttga |
300 |
Q |
| |
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|| ||| |||||| || |||||||||||| || | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |||||||| | |
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| T |
4260212 |
atctgtgtagcttcagaaagattcttaccagagaaatgattgaaatcagcatgagattcagctacggtaagtgaaagagtgtttcctttgatgaatttaa |
4260113 |
T |
|
| Q |
301 |
tgattggcttgtgagaatcatgaggccaaat |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
4260112 |
tgattggcttgtgagaatcatgaggccaaat |
4260082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 4289765 - 4290095
Alignment:
| Q |
1 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289765 |
ctaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagt |
4289864 |
T |
|
| Q |
101 |
aataccaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
4289865 |
aataccaattgaaaatccatagtttggaaaaatggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagatcatga |
4289964 |
T |
|
| Q |
201 |
atttgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttcccttaatgaatttga |
300 |
Q |
| |
|
|||||| |||||| || |||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||| | |
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| T |
4289965 |
atttgtgtagcttcagaaagattcttaccagataaatgattgaaatcagcatgagattcagctatggtaagtgaaagagtgtttcctcttatgaatttaa |
4290064 |
T |
|
| Q |
301 |
tgattggcttgtgagaatcatgaggccaaat |
331 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |
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| T |
4290065 |
tgattggtttgtgagaatcattaggccaaat |
4290095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 329
Target Start/End: Original strand, 4298352 - 4298677
Alignment:
| Q |
4 |
attcagatacttcattttcaagctttctacataggtaagcccaagctttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaat |
103 |
Q |
| |
|
||||||||| ||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298352 |
attcagatatttcctttccaatatttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgtgaagtaat |
4298451 |
T |
|
| Q |
104 |
accaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaatattcaagttaggtaaaagatcatgaatt |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
4298452 |
accaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacataagcttgatcatgagaaatattcaagttaggtaaaagatcatgaatt |
4298551 |
T |
|
| Q |
204 |
tgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttcccttaatgaatttgatga |
303 |
Q |
| |
|
||| |||||| || | |||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |
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| T |
4298552 |
tgtgtagcttcagaaggattcttaccagatagataattgaaatcagaatcagattcagctatggtaagtgaaagagtgtttctcttgaagaatttgatga |
4298651 |
T |
|
| Q |
304 |
ttggcttgtgagaatcatgaggccaa |
329 |
Q |
| |
|
|||| ||||||||||||| ||||||| |
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|
| T |
4298652 |
ttggtttgtgagaatcattaggccaa |
4298677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 75 - 259
Target Start/End: Original strand, 4285109 - 4285293
Alignment:
| Q |
75 |
ccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaatagaagcttggtcatgtgaaa |
174 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||| |
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|
| T |
4285109 |
ccatctaaaacagcatgatgtgaagtaatgcccattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
4285208 |
T |
|
| Q |
175 |
tattcaagttaggtaaaagatcatgaatttgtttagctttagtaagattcttacctgaaagatgattgaaatcagcatcagattc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| | |||||||||| | || | |||||||||| |||||| |||||| |
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|
| T |
4285209 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
4285293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4285066 - 4285111
Alignment:
| Q |
1 |
ctaattcagatacttcattttcaagctttctacataggtaagccca |
46 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4285066 |
ctaattcagaaacttcattttcaagctttctacataggtaagccca |
4285111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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