View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11247_high_1 (Length: 900)
Name: NF11247_high_1
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11247_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 146; Significance: 2e-76; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 38822857 - 38823030
Alignment:
| Q |
11 |
ggagcagagacctttaagcctggactttaattggggtagtaaatcccttagcatagaacttcttaaacttgctactgttaatgtttactcttactacaag |
110 |
Q |
| |
|
|||||| |||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38822857 |
ggagcacagacctctgagcctggactttaattggggtagtaaatcccttagcatataacttcttaaacttgctactgttaatgtttactcttactacaag |
38822956 |
T |
|
| Q |
111 |
attgggagtacattgctttgaaggtatgcattaatcccacctcaactgccattcgaaaagaaaatcaaacctga |
184 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
38822957 |
attgggagtacattgcttggaaggtatgcattaatcccaccacaaccgccattcgaaaagaaaatcaaacctga |
38823030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 190 - 321
Target Start/End: Original strand, 38823074 - 38823203
Alignment:
| Q |
190 |
ttatattataatgagctaaggaagacttgccttaatgtgcctaagtttattaaatttttctaaaatagatattttaatgttattattgtgcttttgtcgc |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38823074 |
ttatattataatgagctaaggaagacttgctttaatgtgcctaagtttattaaatttttctaaaatagatattttaatgttattattgtaattttgtcgc |
38823173 |
T |
|
| Q |
290 |
ttgagtttttactcgttattagacttgaatat |
321 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
38823174 |
ttgag--tttactcgttattagacttgaatat |
38823203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 38823638 - 38823704
Alignment:
| Q |
321 |
tcttttctagtgatagaatttgtctgcagcaccaaatttacattttccagtttttatgagctgcatg |
387 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38823638 |
tcttttctagtgatagaatttgtctccagcaccaaatttacattttccaatttttatgagctgcatg |
38823704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 38831402 - 38831456
Alignment:
| Q |
74 |
taaacttgctactgttaatgtttactcttactacaagattgggagtacattgctt |
128 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
38831402 |
taaacttgctactattaatgtttactcttactacatgatcgggagcacattgctt |
38831456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 38814373 - 38814426
Alignment:
| Q |
75 |
aaacttgctactgttaatgtttactcttactacaagattgggagtacattgctt |
128 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| | ||||||| |
|
|
| T |
38814373 |
aaacttgctactgttaatgtttattcttattacaagattgggagcaaattgctt |
38814426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 38818761 - 38818812
Alignment:
| Q |
57 |
cttagcatagaacttcttaaacttgctactgttaatgtttactcttactaca |
108 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
38818761 |
cttagcaaagaacttgctaaacttgctactgttaatgtttactcttattaca |
38818812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 17198153 - 17198081
Alignment:
| Q |
65 |
agaacttcttaaacttgctactgttaatgtttactcttactacaagattgggagtacattgctttgaaggtat |
137 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | ||||||||||||| ||||||| |||||||| |
|
|
| T |
17198153 |
agaacttgctaaacttgctactgttaatgtttactcttatcataagattgggagtaaattgcttggaaggtat |
17198081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University