View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11247_high_10 (Length: 450)

Name: NF11247_high_10
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11247_high_10
NF11247_high_10
[»] chr1 (7 HSPs)
chr1 (1-440)||(6871100-6871538)
chr1 (98-211)||(36472598-36472710)
chr1 (99-204)||(10799199-10799304)
chr1 (101-185)||(44751954-44752038)
chr1 (113-211)||(32423517-32423613)
chr1 (98-210)||(18635665-18635776)
chr1 (147-210)||(31283772-31283835)
[»] chr8 (7 HSPs)
chr8 (98-211)||(14239217-14239331)
chr8 (92-209)||(18069272-18069389)
chr8 (98-202)||(36665240-36665344)
chr8 (113-204)||(26055464-26055555)
chr8 (113-185)||(12020073-12020145)
chr8 (169-211)||(13380482-13380524)
chr8 (170-211)||(14988507-14988548)
[»] chr7 (2 HSPs)
chr7 (98-205)||(33084908-33085015)
chr7 (131-211)||(37829954-37830034)
[»] chr5 (4 HSPs)
chr5 (98-210)||(6296852-6296963)
chr5 (98-206)||(29814916-29815023)
chr5 (98-204)||(10635301-10635407)
chr5 (144-211)||(39735397-39735465)
[»] chr4 (6 HSPs)
chr4 (99-163)||(8456805-8456869)
chr4 (99-201)||(30979823-30979925)
chr4 (102-204)||(38020376-38020478)
chr4 (98-195)||(2097083-2097180)
chr4 (98-205)||(38450698-38450804)
chr4 (154-210)||(27112403-27112459)
[»] chr2 (4 HSPs)
chr2 (99-210)||(1652535-1652645)
chr2 (98-185)||(26009789-26009876)
chr2 (110-211)||(41508139-41508240)
chr2 (98-164)||(32103577-32103643)
[»] chr3 (6 HSPs)
chr3 (101-211)||(10428020-10428130)
chr3 (98-204)||(42529434-42529540)
chr3 (165-210)||(48308090-48308135)
chr3 (149-211)||(23481386-23481449)
chr3 (110-202)||(51569821-51569914)
chr3 (172-205)||(54913673-54913706)
[»] scaffold0570 (1 HSPs)
scaffold0570 (149-210)||(9084-9146)
[»] chr6 (1 HSPs)
chr6 (154-210)||(2477263-2477319)


Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 6871100 - 6871538
Alignment:
Q  1 cggagggagtatcaaataacaacaacacatttgataacacgaggttcaagttgtaaaattctagttagcatgtggttnnnnnnnnnnnnattgggacgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||             ||||||||||    
T  6871100 cggagggagtatcaaataacaacaacacatttgataacacgaggttcaagttgtaaaactctagttagcatgtggttgggggtgggggg-ttgggacgtt 6871198  T
Q  101 gggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  6871199 gggtagcttaattggtttgagttaagggataaggacttggatgtcctgggttcaaacctgaacgaataagtatatactaatctaataactaactactaac 6871298  T
Q  201 atttgtcattcnnnnnnntaaaataaatttggcatgccgttaattaaatgtgcagcagtgaaaaccacatcaccccataattaattgttaggctttgatt 300  Q
    ||||||||||        ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6871299 atttgtcatttaaaaaaataaaataaatttggcatgccgttaattaaatgtgcagtagtgaaaaccacatcaccccataattaattgttaggctttgatt 6871398  T
Q  301 ttgagaaactcagaattttattttaaagatatatgtattacaattgaaaattcatttaattttggttttgtgaataatgaaaaaacttcgtaaattttat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6871399 ttgagaaactcagaattttattttaaagatatatgtattacaattgaaaattcatttaattttggttttgtgaataatgaaaaaacttcgtaaattttat 6871498  T
Q  401 agtggctgatgttagttttccctttttacacaggtctgtg 440  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6871499 agtggctgatgttagttttccctttttacacaggtctgtg 6871538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 36472710 - 36472598
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactact 197  Q
    ||||||||||| || |||| |||| ||||||||||||| |||||  ||||||||||||||| |||| ||  || ||| |||||||||| |||||| ||||    
T  36472710 gttgggtagctcaactggtctgagctaagggataaggagttggaggtcctgggttcaaacccggacaaaggaggaaaaactaatctaacaactaa-tact 36472612  T
Q  198 aacatttgtcattc 211  Q
    ||||| ||||||||    
T  36472611 aacatctgtcattc 36472598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 10799199 - 10799304
Alignment:
Q  99 ttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactacta 198  Q
    |||||||||| || | ||||||| ||||||||||| | ||| |  ||||||||||||||| ||| |||  |||||||| |||||||| |||||| |||||    
T  10799199 ttgggtagctcaactagtttgagctaagggataagtagttgaagttcctgggttcaaaccaggatgaaggagtaaatattaatctaacaactaattacta 10799298  T
Q  199 acattt 204  Q
    ||||||    
T  10799299 acattt 10799304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 44752038 - 44751954
Alignment:
Q  101 gggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaa 185  Q
    |||||||| || ||||||||| ||||||||||||  |||||  | ||||||||||||| |||| ||| |||||||| ||||||||    
T  44752038 gggtagctcaactggtttgagctaagggataaggggttggaggttctgggttcaaacccggacaaatgagtaaatattaatctaa 44751954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 32423613 - 32423517
Alignment:
Q  113 tggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcattc 211  Q
    ||||||||  ||||||||||| | |||||  || |||||||||||| |||| ||  |||||||| |||||||||  ||||||| |||||||||||||||    
T  32423613 tggtttgaactaagggataagaagttggagttcttgggttcaaacccggacaaaggagtaaatattaatctaat--ctaactattaacatttgtcattc 32423517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 18635776 - 18635665
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactact 197  Q
    ||||||||| | || |||| |||| ||||||||||||| || ||  ||||||||||||| | |||| ||| || ||| ||| |||||| |||||| ||||    
T  18635776 gttgggtagttcaactggtctgagctaagggataaggagtttgaggtcctgggttcaaatccggacaaatgag-aaaaactgatctaacaactaattact 18635678  T
Q  198 aacatttgtcatt 210  Q
    |||||||| ||||    
T  18635677 aacatttgccatt 18635665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 31283772 - 31283835
Alignment:
Q  147 tgggttcaaacctggacgaataagtaaatactaatctaataa-ctaactactaacatttgtcatt 210  Q
    |||||||||||||| |||| | |||||||| |||||||| || ||||||||||| ||||||||||    
T  31283772 tgggttcaaacctg-acgattgagtaaatattaatctaacaaactaactactaatatttgtcatt 31283835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 98 - 211
Target Start/End: Complemental strand, 14239331 - 14239217
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagt-aaatactaatctaataactaactac 196  Q
    ||||||||||| || |||| |||| || |||||||||| |||||  ||||||||| |||||||||||||| ||| ||||| ||||||||||||||||| |    
T  14239331 gttgggtagctcaactggtctgagctaggggataaggagttggaggtcctgggtttaaacctggacgaatgagtaaaatattaatctaataactaacttc 14239232  T
Q  197 taacatttgtcattc 211  Q
    || ||||||||||||    
T  14239231 taccatttgtcattc 14239217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 18069272 - 18069389
Alignment:
Q  92 tgggacgttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataacta 191  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||| ||| |  || | |||||||||  |||| ||  |||||||| || || || |||||    
T  18069272 tgggaagttgggtagctcaattgatttgagttaagggataaggagttgaaggtcataggttcaaactcggacaaagtagtaaatattattccaacaacta 18069371  T
Q  192 actactaacatttgtcat 209  Q
    | ||||||||||||||||    
T  18069372 attactaacatttgtcat 18069389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 36665344 - 36665240
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactact 197  Q
    |||||||||||||| ||||||||| |||||| |||| |  |||  || ||||||||||||| |||| ||  | |||||| |||||||| |||||||||||    
T  36665344 gttgggtagcttaactggtttgagctaagggttaagtagatggggatactgggttcaaacccggacaaaggaataaatattaatctaacaactaactact 36665245  T
Q  198 aacat 202  Q
    |||||    
T  36665244 aacat 36665240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 26055464 - 26055555
Alignment:
Q  113 tggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacattt 204  Q
    ||||||| | ||||||||||||| |||||  || ||||||||||| || | |||  |||||||| ||||||||||||||| |||||||||||    
T  26055464 tggtttgtgataagggataaggagttggaggtcatgggttcaaacttgaatgaaagagtaaatattaatctaataactaattactaacattt 26055555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 12020073 - 12020145
Alignment:
Q  113 tggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaa 185  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||   | |||| |||||||| ||||||||    
T  12020073 tggtttgagttaagggataaggagttggaggtcctgggttcaaacccaaatgaatgagtaaatattaatctaa 12020145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 13380482 - 13380524
Alignment:
Q  169 agtaaatactaatctaataactaactactaacatttgtcattc 211  Q
    |||||||| |||||||| |||||||||||| ||||||||||||    
T  13380482 agtaaatattaatctaacaactaactactagcatttgtcattc 13380524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 14988507 - 14988548
Alignment:
Q  170 gtaaatactaatctaataactaactactaacatttgtcattc 211  Q
    ||||||| |||||||||||| ||||||||||||||| |||||    
T  14988507 gtaaatattaatctaataaccaactactaacatttgacattc 14988548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 33085015 - 33084908
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactact 197  Q
    ||||||||||| || ||||||||| ||||||||| ||| |||||  ||||||||| |||||||||||||  || ||| |||||||||| |||||| ||||    
T  33085015 gttgggtagctcaactggtttgagctaagggatatggagttggaggtcctgggttaaaacctggacgaaggagaaaaaactaatctaacaactaattact 33084916  T
Q  198 aacatttg 205  Q
    ||||||||    
T  33084915 aacatttg 33084908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 211
Target Start/End: Original strand, 37829954 - 37830034
Alignment:
Q  131 aaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcattc 211  Q
    ||||| |||||  |||||| |||||||| |||||||  |||| ||| |||||||| |||||| ||||||||||||||||||    
T  37829954 aaggagttggaagtcctggcttcaaacccggacgaaggagtagatattaatctaacaactaattactaacatttgtcattc 37830034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 6296852 - 6296963
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactact 197  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||  | |||||||||||||  ||| ||  || ||| |||||||||| |||||| ||||    
T  6296852 gttgggtagctcaattggtttgagctaagggataaggagttggaggttctgggttcaaacccagacaaaggag-aaaaactaatctaacaactaattact 6296950  T
Q  198 aacatttgtcatt 210  Q
    |||||||| ||||    
T  6296951 aacatttgccatt 6296963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 29815023 - 29814916
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactact 197  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||  |||| |||||||||||| || ||  || ||| |||||| ||| || ||| ||||    
T  29815023 gttgggtagctcaattggtttgagctaagggataaggagttggaggtcctaggttcaaacctgaacaaaggag-aaaaactaatgtaacaaataattact 29814925  T
Q  198 aacatttgt 206  Q
    |||||||||    
T  29814924 aacatttgt 29814916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 204
Target Start/End: Complemental strand, 10635407 - 10635301
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactact 197  Q
    ||||||||||| || ||||||||| ||||||||||||| |||||  |||||| |||||||| || ||||  || ||| | | |||||| |||||| ||||    
T  10635407 gttgggtagctcaactggtttgagctaagggataaggagttggaggtcctggcttcaaacccgggcgaaggagaaaaaaatgatctaagaactaattact 10635308  T
Q  198 aacattt 204  Q
    |||||||    
T  10635307 aacattt 10635301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 39735465 - 39735397
Alignment:
Q  144 tcctgggttcaaacctggacgaataagtaaatactaatctaataa-ctaactactaacatttgtcattc 211  Q
    |||||| |||||||| | || ||| |||||||| |||| ||| || |||||||||||||||||||||||    
T  39735465 tcctggattcaaacccgaacaaatgagtaaatattaatataacaaactaactactaacatttgtcattc 39735397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 8456805 - 8456869
Alignment:
Q  99 ttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggac 163  Q
    |||||||||| || ||||||||| ||||||||||||| |||||| ||||||||||||||| ||||    
T  8456805 ttgggtagctcaactggtttgagctaagggataaggagttggatgtcctgggttcaaacccggac 8456869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 30979823 - 30979925
Alignment:
Q  99 ttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactacta 198  Q
    |||||||||| || ||||||||| ||||||||||||| |||||  || |||| ||||||| |||||||  || ||| |||||||||| ||||||  ||||    
T  30979823 ttgggtagctcaactggtttgagctaagggataaggagttggaggtcttgggctcaaacccggacgaaggagaaaaaactaatctaacaactaatcacta 30979922  T
Q  199 aca 201  Q
    |||    
T  30979923 aca 30979925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 38020376 - 38020478
Alignment:
Q  102 ggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaaca 201  Q
    ||||||| || ||||||||| |||||| |||||| |||||  |||  |||||||||| |||||||  |||||||| |||||||| |||| | ||||||||    
T  38020376 ggtagctcaactggtttgagctaagggttaaggagttggaggtccaaggttcaaacccggacgaaggagtaaatattaatctaacaactgattactaaca 38020475  T
Q  202 ttt 204  Q
    |||    
T  38020476 ttt 38020478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 2097083 - 2097180
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaacta 195  Q
    ||||||||||| || | ||||||| |||||| |||||| |||||  ||||||||||||||| |||| |   |||||||| |||||||| |||||||||    
T  2097083 gttgggtagctcaactagtttgagctaagggttaaggagttggaggtcctgggttcaaacccggacaagggagtaaatattaatctaacaactaacta 2097180  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 38450698 - 38450804
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactact 197  Q
    ||||||||||| || ||||||||| |||||| |||| | |||||    ||||||||||| | ||||||||||||||||| | |||||| || ||| ||||    
T  38450698 gttgggtagctcaactggtttgagctaagggttaagaagttggaggctctgggttcaaatccggacgaataagtaaata-ttatctaacaattaattact 38450796  T
Q  198 aacatttg 205  Q
    || |||||    
T  38450797 aaaatttg 38450804  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 27112459 - 27112403
Alignment:
Q  154 aaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcatt 210  Q
    ||||| ||| ||| ||||||||| |||||||| || ||| |||||||||||||||||    
T  27112459 aaaccaggatgaaaaagtaaatattaatctaacaattaattactaacatttgtcatt 27112403  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 1652535 - 1652645
Alignment:
Q  99 ttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactacta 198  Q
    |||||||||| || ||||||||| ||||||||||| | |||||  |||| |||||||||| ||| |||  || ||| |||||||||| |||||| ||| |    
T  1652535 ttgggtagctcaactggtttgagctaagggataagaaattggaggtcctaggttcaaacccggatgaaggag-aaaaactaatctaacaactaattacca 1652633  T
Q  199 acatttgtcatt 210  Q
    ||||||| ||||    
T  1652634 acatttgccatt 1652645  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 26009789 - 26009876
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaa 185  Q
    ||||||||||| || |||||||||  ||||||||| || |||||  ||||||||||||||| |||||||  || ||| ||||||||||    
T  26009789 gttgggtagctcaactggtttgagccaagggataaagagttggaggtcctgggttcaaacccggacgaaggagaaaaaactaatctaa 26009876  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 41508240 - 41508139
Alignment:
Q  110 aattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcat 209  Q
    ||||| |||||| ||||||||||| | || ||  | ||| ||||||||| |||||||  |||||||| |||| ||| |||||| | ||||||||||||||    
T  41508240 aattgatttgagctaagggataagaagttagaggttctgagttcaaacccggacgaaggagtaaatattaatataacaactaattgctaacatttgtcat 41508141  T
Q  210 tc 211  Q
    ||    
T  41508140 tc 41508139  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 32103577 - 32103643
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacg 164  Q
    ||||||||||| || | ||||||| |||||||| |||| |||||  || ||||||||||||||||||    
T  32103577 gttgggtagctcaactagtttgagctaagggatgaggagttggaggtcatgggttcaaacctggacg 32103643  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 10428130 - 10428020
Alignment:
Q  101 gggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaac 200  Q
    |||||||||| || ||||||||| ||||||||||| ||| | | | |||||||||||    || ||| |||||||  |||||||| |||||| ||| |||    
T  10428130 gggtagcttagttagtttgagtttagggataaggagttgaaaaccatgggttcaaactcatacaaatgagtaaatgttaatctaacaactaattacgaac 10428031  T
Q  201 atttgtcattc 211  Q
    |||||||||||    
T  10428030 atttgtcattc 10428020  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 42529434 - 42529540
Alignment:
Q  98 gttgggtagcttaattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaataactaactact 197  Q
    ||||||||||| |  ||||||||| ||||||||||||| |||||  || || |||||||| |  |||||  |||||||| |||||||| || | ||||||    
T  42529434 gttgggtagctcagctggtttgagctaagggataaggagttggaggtcatgagttcaaacttaaacgaaagagtaaatattaatctaacaattgactact 42529533  T
Q  198 aacattt 204  Q
    |||||||    
T  42529534 aacattt 42529540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 48308135 - 48308090
Alignment:
Q  165 aataagtaaatactaatctaataactaactactaacatttgtcatt 210  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||||    
T  48308135 aataattaaatattaatctaacaactaactactaacatttgtcatt 48308090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 23481449 - 23481386
Alignment:
Q  149 ggttcaaacctggacgaataagtaaatact-aatctaataactaactactaacatttgtcattc 211  Q
    ||||||||||||||||||  ||| |||||| ||||||| ||||||||||||  |||||||||||    
T  23481449 ggttcaaacctggacgaaatagtcaatacttaatctaacaactaactactaggatttgtcattc 23481386  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 51569821 - 51569914
Alignment:
Q  110 aattggtttgagttaagggataaggacttggatatcctgggttcaaacctggacgaataagtaaatactaatctaa-taactaactactaacat 202  Q
    |||||||||||| ||||||| ||||| |||||  | ||||||||||||  |||||||  || | ||| ||||||||  ||||||||||||||||    
T  51569821 aattggtttgagctaagggaaaaggagttggaggttctgggttcaaactcggacgaaggagaagatattaatctaacaaactaactactaacat 51569914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 54913706 - 54913673
Alignment:
Q  172 aaatactaatctaataactaactactaacatttg 205  Q
    |||||||||||||| |||||||||||||||||||    
T  54913706 aaatactaatctaacaactaactactaacatttg 54913673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 9084 - 9146
Alignment:
Q  149 ggttcaaacctggacgaataagtaaatact-aatctaataactaactactaacatttgtcatt 210  Q
    ||||||||||||||||||  ||| |||||| ||||||| ||||||||||||  ||||||||||    
T  9084 ggttcaaacctggacgaaatagtcaatacttaatctaacaactaactactaggatttgtcatt 9146  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 2477263 - 2477319
Alignment:
Q  154 aaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcatt 210  Q
    ||||| ||| ||| ||||||||| |||||||| || ||| |||||||||||||||||    
T  2477263 aaaccaggatgaaaaagtaaatattaatctaacaattaattactaacatttgtcatt 2477319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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