View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11247_high_28 (Length: 241)
Name: NF11247_high_28
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11247_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 34906542 - 34906318
Alignment:
| Q |
1 |
ttcttgaattacatgttttaccaaagtccaccttgaataagatcaactgtttgttctatttatttaccttagccaccacatcatttgcaatagtgatgcc |
100 |
Q |
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| T |
34906542 |
ttcttgaattacatgttttaccaaagtccaccttaaataagatcaactgtttgttctatttatttaccttagccaccacatcatttgcaatagtgatgtc |
34906443 |
T |
|
| Q |
101 |
atctaaaatatgttttctcttcacaaacgtaaatttatcgtcttaaatcaccttgaaaacattttgtttagtctatttgctaagaccttcgttggcactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34906442 |
atctaaaatatgttttctcttcacaaacgtaaatttatcgttttaaatcaccttaaaaacattttgtttagtctatttgctaagaccttcgttggcactt |
34906343 |
T |
|
| Q |
201 |
tatacatgcatcccactaaagatac |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
34906342 |
tatacatgcatcccactaaagatac |
34906318 |
T |
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