View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11247_high_8 (Length: 480)
Name: NF11247_high_8
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11247_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 91 - 470
Target Start/End: Original strand, 8101456 - 8101836
Alignment:
| Q |
91 |
atcctaaatttagaaattatttattcaaaaaatcaaatgttacaaattccaacgaaagaaatacacatattttcataaatatatacttttaaaaatcctt |
190 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8101456 |
atcctaaatttagaaattattcattcaaaaaatcaaatgttacaaatttcaacaaaagaaatacacatattttcataaatatatacttttaaaaatcttt |
8101555 |
T |
|
| Q |
191 |
aaagagtatcagaaaggcagtcgttagtatttttcttcaaacaaaa-gctcataactgagtcttcacaaaatccaaaatgcaactaattatgtgattgga |
289 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8101556 |
aaagagtgtcagaaaggcagttgttaatattttccttcaaacaaaaagctcataactgagtcttcacaaaatccaaaatgcaactaattatgtgattgga |
8101655 |
T |
|
| Q |
290 |
tcctatgcttgtgagtcttgggttttagttggagcacgtgatcctcgagctataacagtttttcccttagcagtacagaaaatacagcaatgaaatgcag |
389 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8101656 |
tcctatgcttttgagtcttgggttttagttggagcacgtgatcctcgagctataacagttttttccttagcagtacagaaaatacagcaatgaagtgcag |
8101755 |
T |
|
| Q |
390 |
attaagcaatctcagtcaatatcaggagcttctccaaatacaactttctacaaagtaactgtcatcactctcttcttcatc |
470 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8101756 |
attaagcaatctcaatcaatatcaggagcttctccaaatacagctttctacaaagtaactgtcatcactctcttcttcatc |
8101836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 8100481 - 8100524
Alignment:
| Q |
19 |
acaactcagacattttaaaagcaaacatatacggtgtcaatcaa |
62 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8100481 |
acaactcaaacattttaaaagcaaacatttacggtgtcaatcaa |
8100524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 815003 - 815054
Alignment:
| Q |
91 |
atcctaaatttagaaattatttattcaaaaaatcaaatgttacaaattccaa |
142 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
815003 |
atcccaaatttagaaattattttttaaaaaaatcaaatgtcacaaattccaa |
815054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 41583550 - 41583654
Alignment:
| Q |
91 |
atcctaaatttagaaattatttattcaaaaaatcaaatgttacaaattccaacgaaagaaatacacatattttcataaatatatacttttaaaaatcctt |
190 |
Q |
| |
|
|||| |||||||||||||||| |||||||| | |||| ||||||||||||| | | |||||||| ||||||||||| || |||| || || || ||| |
|
|
| T |
41583550 |
atcccaaatttagaaattattccttcaaaaagttaaatattacaaattccaatgcattgaatacacagattttcataaaaatttactattgaagattctt |
41583649 |
T |
|
| Q |
191 |
aaaga |
195 |
Q |
| |
|
||||| |
|
|
| T |
41583650 |
aaaga |
41583654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 7574273 - 7574231
Alignment:
| Q |
96 |
aaatttagaaattatttattcaaaaaatcaaatgttacaaatt |
138 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||||| |
|
|
| T |
7574273 |
aaatttagaaaatatttcttaaaaaaatcaaatgttacaaatt |
7574231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University