View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11247_low_11 (Length: 444)
Name: NF11247_low_11
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11247_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 41584229 - 41584651
Alignment:
| Q |
1 |
gataggcacttggcaaacatgaagctaaaggaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtg |
100 |
Q |
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| T |
41584229 |
gataggcacttggctaacatgaagctaaaggaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtg |
41584328 |
T |
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| Q |
101 |
gagaaaaggttaggaaaagtagttaggaatcaggttaactttttatgnnnnnnnnnaatgtatgactattattgtagtcaagttagtctacgctttctct |
200 |
Q |
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| T |
41584329 |
gagaaaaggttaggaaaagtagttaggagtcaggt-aattctttatgttttttttaa---tatgactattattgtagtcaagttagtctacgctttctct |
41584424 |
T |
|
| Q |
201 |
ttgaagtgcattgcttagacaggaaaaactaaaattttggaaaattgatctcgaagagatggacagagatataaaggctcacctgat--acacacacaca |
298 |
Q |
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| T |
41584425 |
ttgaagtgcattgcttagacaggaaaaactaaaattttggaaaattgatctcgaagagatggacagagatataaaggctcacctgatacacacacacaca |
41584524 |
T |
|
| Q |
299 |
agctgtattcaataaaacatatatgctttgcagcaaatgatctcagtgtccttgttctgcatatcaattttcggctttgatattttcttctgtaatgttg |
398 |
Q |
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| T |
41584525 |
agctgtattcaataaaacatatatgctttgcagcaaatgatctcagtgtccttgttctgcatattaattttcggctttgatattttcttctgtaatgttg |
41584624 |
T |
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| Q |
399 |
gaatatatttttatggtttaaggattg |
425 |
Q |
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| T |
41584625 |
gtatatatttttatggtttaaggattg |
41584651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 118
Target Start/End: Complemental strand, 40179641 - 40179561
Alignment:
| Q |
38 |
atcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaaaaggttaggaaaa |
118 |
Q |
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| T |
40179641 |
atcttaatatcagggcatcattttcataggaggttaaactattaatgcaaaaataattgagtggagaaaatgtttggaaaa |
40179561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 44461287 - 44461361
Alignment:
| Q |
31 |
gaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaa |
105 |
Q |
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| T |
44461287 |
gaaatgtatcttaatattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaa |
44461361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 44468820 - 44468894
Alignment:
| Q |
31 |
gaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaa |
105 |
Q |
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| T |
44468820 |
gaaatgtatcttaatattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaa |
44468894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 46360096 - 46360170
Alignment:
| Q |
31 |
gaaatgaatcttaatattagggcatcattttgataatatgttagaatcttaatgcaaaattaattgagtggagaa |
105 |
Q |
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| T |
46360096 |
gaaatgtatcttaatattagggcattattttgataggaagttagaatcttgatgcaaaattaattgagttgagaa |
46360170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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