View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11247_low_12 (Length: 404)
Name: NF11247_low_12
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11247_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 3256055 - 3255647
Alignment:
| Q |
1 |
actttgtgtcagaggtcttctggttcac---------ttaataatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaac |
91 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3256055 |
actttgtgtcagaggtcttctggttcacagcaggcacttaataatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaac |
3255956 |
T |
|
| Q |
92 |
acattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgttctttgctttga |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255955 |
acattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgttctttgctttga |
3255856 |
T |
|
| Q |
192 |
agatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaag |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
3255855 |
agatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccctcaaaatg |
3255756 |
T |
|
| Q |
292 |
ttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttc |
391 |
Q |
| |
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||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255755 |
tttcgcctcaagtgtcgttttaaagaccacaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttc |
3255656 |
T |
|
| Q |
392 |
atctcactc |
400 |
Q |
| |
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||||||||| |
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|
| T |
3255655 |
atctcactc |
3255647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 7813983 - 7814076
Alignment:
| Q |
50 |
tggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttc |
143 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||| |||||||| | |||||||||||| |||||| ||||| ||||||| || ||||| |
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|
| T |
7813983 |
tggtggatagaatcagcgatttaccggatgagttattgtctcacattctctcttttctcccaactaaactcgctttctctacaaccgtactttc |
7814076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 7871216 - 7871340
Alignment:
| Q |
58 |
agaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagca |
157 |
Q |
| |
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||||||||| |||||| |||||||| ||| ||||||| | ||| |||||||| |||||| ||||||||||||| ||||||| |||||||||| | |
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| T |
7871216 |
agaatcagtagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaacggtggatcc |
7871315 |
T |
|
| Q |
158 |
aactatgttgttcactacctgttct |
182 |
Q |
| |
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|||||| | |||||| |||||||| |
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|
| T |
7871316 |
cactatgctattcactccctgttct |
7871340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 7806893 - 7806822
Alignment:
| Q |
48 |
tttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaact |
119 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| ||| ||||||| | |||||||| ||| ||||| |
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|
| T |
7806893 |
tttggtcgatagaataagtgatttaccagatgagttactgctttacattctctcttttctccaaaccaaact |
7806822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 52 - 182
Target Start/End: Original strand, 14017655 - 14017785
Alignment:
| Q |
52 |
gtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggt |
151 |
Q |
| |
|
||||||||||| || |||||| | ||||||||||||| ||||| |||||||||||||||||||| | ||||||||||| | |||||||||||| ||| |
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| T |
14017655 |
gtcgatagaattagcgatttatcagatgagttattgcggcacatactttgttttctcccaacaaatattgctttcactacatccgttctttcgaaaaggt |
14017754 |
T |
|
| Q |
152 |
ggagcaaactatgttgttcactacctgttct |
182 |
Q |
| |
|
||| ||||||||| | || ||| |||||||| |
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|
| T |
14017755 |
ggaccaaactatgctatttactccctgttct |
14017785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 392
Target Start/End: Original strand, 14020277 - 14020483
Alignment:
| Q |
190 |
gaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaac----ccttc |
285 |
Q |
| |
|
|||||||||| || ||| |||||||| | ||| | |||||||| ||||||| |||||||| |||||||||||| |||||| || |||| || || |
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|
| T |
14020277 |
gaagatgaaatcatcaacgattatgatgtcttaccatgcttctgttgcattgtcaatactatcatgctctctcctcatgcaaccaaccaactaaaccctc |
14020376 |
T |
|
| Q |
286 |
aaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgagg |
385 |
Q |
| |
|
|||| |||| ||||||| | || || || | ||| ||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||| |||| |
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|
| T |
14020377 |
aaaatgtttcgcctcaactttcgttatagataccacaagcaaaatcgtccatttaatgtgacaaaatggctagaagccacaaaagagcgttgtatcgagg |
14020476 |
T |
|
| Q |
386 |
aagttca |
392 |
Q |
| |
|
|| |||| |
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|
| T |
14020477 |
aacttca |
14020483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 399
Target Start/End: Original strand, 14271406 - 14271579
Alignment:
| Q |
227 |
gcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatca |
326 |
Q |
| |
|
||||||| | |||||| ||| |||| ||||||||| ||||||||| || ||||| |||||| |||| ||||||| | || |||| | || ||| || |
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|
| T |
14271406 |
gcttctgccacattgtcaatattatcatgctctctcttcgtgcaaccaacaaacccctcaaaatgtttcgcctcaactttcgttttggatgccacaagca |
14271505 |
T |
|
| Q |
327 |
aaagg-gtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttcatctcact |
399 |
Q |
| |
|
||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| |||| |||||| |
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|
| T |
14271506 |
aaaatagtccatttaatgtgtcaaaatggctagaagccacaaaagagcgttgtattgaggaacttcacctcact |
14271579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 397
Target Start/End: Original strand, 14017848 - 14017982
Alignment:
| Q |
263 |
ctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagc |
362 |
Q |
| |
|
|||||| ||| ||||||||| |||||| ||| ||||||| |||| |||| || ||||| ||||| || |||||||| ||| | ||||||||||||| |
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|
| T |
14017848 |
ctcgtgtaaccaatcaacccctcaaaatctttagcctcaactgtcgctttatggaacgcaagcaaaatagttcatttaatttgaaaaaatggctagaagc |
14017947 |
T |
|
| Q |
363 |
ctcaaaacagcgtagtattgaggaagttcatctca |
397 |
Q |
| |
|
| |||||| | | ||||||||||| ||||||||| |
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| T |
14017948 |
cacaaaacgacattgtattgaggaatttcatctca |
14017982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 37997736 - 37997616
Alignment:
| Q |
34 |
aatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaa |
133 |
Q |
| |
|
|||| ||| |||| ||||| |||||||||||| |||||||| |||||||||||| |||| || | |||||| |||| |||||| |||| ||||||| |
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|
| T |
37997736 |
aatggtggcaacaatttggacgatagaatcagcgatttaccagatgagttattgtgttacatactctcttttctaccaatgaaactcgcttttactacaa |
37997637 |
T |
|
| Q |
134 |
cagttctttcgaaacggtgga |
154 |
Q |
| |
|
| |||||||| || ||||||| |
|
|
| T |
37997636 |
ctgttctttcaaagcggtgga |
37997616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 19317795 - 19317704
Alignment:
| Q |
41 |
gaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactaca |
132 |
Q |
| |
|
||||||||| || |||||||| || |||||||| |||||||||||| ||||||| | |||||||||||||||||| |||| |||||| |
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|
| T |
19317795 |
gaaacagttcagtggatagaataagcgatttaccagatgagttattgatttacattctctcttttctcccaacaaaactagcttttactaca |
19317704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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