View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11247_low_13 (Length: 389)

Name: NF11247_low_13
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11247_low_13
NF11247_low_13
[»] chr7 (5 HSPs)
chr7 (7-211)||(21891020-21891224)
chr7 (256-306)||(21890925-21890975)
chr7 (256-306)||(46007711-46007761)
chr7 (339-379)||(21890852-21890892)
chr7 (339-379)||(46007794-46007834)
[»] chr3 (3 HSPs)
chr3 (7-211)||(41049152-41049356)
chr3 (256-306)||(41049415-41049465)
chr3 (339-379)||(41049497-41049537)
[»] chr4 (2 HSPs)
chr4 (7-211)||(13676003-13676207)
chr4 (256-306)||(22616859-22616909)
[»] chr1 (5 HSPs)
chr1 (7-207)||(13621064-13621263)
chr1 (7-207)||(52039437-52039636)
chr1 (7-207)||(40379822-40380022)
chr1 (7-129)||(40369049-40369171)
chr1 (256-306)||(13621386-13621437)
[»] chr6 (1 HSPs)
chr6 (7-207)||(19964511-19964713)
[»] chr5 (1 HSPs)
chr5 (7-207)||(1687108-1687307)
[»] chr2 (1 HSPs)
chr2 (256-295)||(39644325-39644364)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 21891224 - 21891020
Alignment:
Q  7 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21891224 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 21891125  T
Q  107 atcgacacttctgaagaaatagctaaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcaggac 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21891124 atcgacacttctgaagaaatagctaaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcaggac 21891025  T
Q  207 aatag 211  Q
    |||||    
T  21891024 aatag 21891020  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 21890975 - 21890925
Alignment:
Q  256 gtaggtggatttgacacagctcatgctgctgctaggtaaatctttgaacat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21890975 gtaggtggatttgacacagctcatgctgctgctaggtaaatctttgaacat 21890925  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 46007711 - 46007761
Alignment:
Q  256 gtaggtggatttgacacagctcatgctgctgctaggtaaatctttgaacat 306  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46007711 gtaggtggatttgacacagttcatgctgctgctaggtaaatctttgaacat 46007761  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 379
Target Start/End: Complemental strand, 21890892 - 21890852
Alignment:
Q  339 attggtgagtagattccaaattttgaatatcagagcctatg 379  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  21890892 attggtgagtagattccaaattttgaatatcagagcctatg 21890852  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 46007794 - 46007834
Alignment:
Q  339 attggtgagtagattccaaattttgaatatcagagcctatg 379  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  46007794 attgttgagttgattccaaattttgaatatcagagcctatg 46007834  T

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Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 211
Target Start/End: Original strand, 41049152 - 41049356
Alignment:
Q  7 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  41049152 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggatgttgatgctgttgtgacaaacttgaaaagcagagcgcgaatg 41049251  T
Q  107 atcgacacttctgaagaaatagctaaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcaggac 206  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41049252 attgacacttctgaagaaatagctcaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcaggac 41049351  T
Q  207 aatag 211  Q
    |||||    
T  41049352 aatag 41049356  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 41049415 - 41049465
Alignment:
Q  256 gtaggtggatttgacacagctcatgctgctgctaggtaaatctttgaacat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41049415 gtaggtggatttgacacagctcatgctgctgctaggtaaatctttgaacat 41049465  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 41049497 - 41049537
Alignment:
Q  339 attggtgagtagattccaaattttgaatatcagagcctatg 379  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  41049497 attgttgagttgattccaaattttgaatatcagagcctatg 41049537  T

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Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 13676207 - 13676003
Alignment:
Q  7 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  13676207 caaatcagtagcagctggaatgaatgcaatggatctgagacgaggtataaatatggatgttgatgttgttgtgacaaacttgaaaagcagagcacgaatg 13676108  T
Q  107 atcgacacttctgaagaaatagctaaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcaggac 206  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13676107 atcgacacttctgaagaaatagctcaggtatgtgtatcaaatttttagagctaacaggcatattccaagaaagtggtgacaacctcaaggactgcaggac 13676008  T
Q  207 aatag 211  Q
    |||||    
T  13676007 aatag 13676003  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 22616909 - 22616859
Alignment:
Q  256 gtaggtggatttgacacagctcatgctgctgctaggtaaatctttgaacat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22616909 gtaggtggatttgacacagctcatgctgctgctaggtaaatctttgaacat 22616859  T

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Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 13621064 - 13621263
Alignment:
Q  7 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13621064 caaatcagtagcagctg-aatgaatgcaatggatctgaggcgaggtataaatatggatgttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 13621162  T
Q  107 atcgacacttctgaagaaatagctaaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcaggac 206  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13621163 atcgacacttccgaagaaatagctcaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgactacctcaaggactgcaggac 13621262  T

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Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 52039636 - 52039437
Alignment:
Q  7 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  52039636 caaatcagtagcagctg-aatgaatgcaatggatctgaggcgaggtataaatatggatgttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 52039538  T
Q  107 atcgacacttctgaagaaatagctaaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcaggac 206  Q
    || |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52039537 attgacacttccgaagaaataactcaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgactacctcaaggactgcaggac 52039438  T

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Target: chr1; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 40380022 - 40379822
Alignment:
Q  7 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 106  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  40380022 caaatcagtagcagctggaatgaatgcaatggacctgaggcgaggtataaatatggctgttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 40379923  T
Q  107 atcgacacttctgaagaaatagctaaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcaggac 206  Q
    |||  ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||| |  |||||||||||||||    
T  40379922 atcagcacttctgaagaaatagctcaggtttgtgtatcaaatttttagagctaataggcatattccaagaatatggtgacagctacaaggactgcaggac 40379823  T
Q  207 a 207  Q
    |    
T  40379822 a 40379822  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 40369171 - 40369049
Alignment:
Q  7 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 106  Q
    ||||||||| || |||||||||||||| ||||| |||||||||||||||||||||| | |||| |||||||| |||| | | |||||||||||||| |||    
T  40369171 caaatcagttgccgctggaatgaatgcgatggacctgaggcgaggtataaatatggctgttgacgctgttgtcacaagccttaaaagcagagcacggatg 40369072  T
Q  107 atcgacacttctgaagaaatagc 129  Q
    ||   ||||||||||||||||||    
T  40369071 attagcacttctgaagaaatagc 40369049  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 13621386 - 13621437
Alignment:
Q  256 gtaggtggatttgacacagctcatg-ctgctgctaggtaaatctttgaacat 306  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13621386 gtaggtggatttgacacagctcatgcctgctgctaggtaaatctttgaacat 13621437  T

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Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 19964511 - 19964713
Alignment:
Q  7 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggt--ataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaa 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  19964511 caaatcagtagcagctggaatgaatgcaatggatttgaggcgaggtgtataaatatggatgttgatgttgttgtgacaaacttgaaaagcagagtacgaa 19964610  T
Q  105 tgatcgacacttctgaagaaatagctaaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcagg 204  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19964611 tgatcgacacttctgaagaaatagctcaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcagg 19964710  T
Q  205 aca 207  Q
    |||    
T  19964711 aca 19964713  T

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Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 1687307 - 1687108
Alignment:
Q  7 caaatcagtagcagctggaatgaatgcaatggatctgaggcgaggtataaatatggattttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1687307 caaatcagtagcagctg-aatgaatgcaatggatctgaggcgaggtataaatatggatgttgatgctgttgtgacaaacttgaaaagcagagcacgaatg 1687209  T
Q  107 atcgacacttctgaagaaatagctaaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgacaacctcaaggactgcaggac 206  Q
    || |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1687208 attgacacttccgaagaaataactcaggtatgtgtatcaaatttttagagctaataggcatattccaagaaagtggtgactacctcaaggactgcaggac 1687109  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 39644325 - 39644364
Alignment:
Q  256 gtaggtggatttgacacagctcatgctgctgctaggtaaa 295  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  39644325 gtaggtggatttgacacggctcatgctgctgctaggtaaa 39644364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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