View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11247_low_14 (Length: 349)
Name: NF11247_low_14
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11247_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 8101515 - 8101836
Alignment:
| Q |
19 |
aatacacatattttcataaatatatacttttaaaaatccttaaagagtatcagaaaggcagtcgttagtatttttcttcaaacaaaa-gctcataactga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||| |||||||||||| |||||||||||| |
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| T |
8101515 |
aatacacatattttcataaatatatacttttaaaaatctttaaagagtgtcagaaaggcagttgttaatattttccttcaaacaaaaagctcataactga |
8101614 |
T |
|
| Q |
118 |
gtcttcacaaaatccaaaatgcaactaattatgtgattggatcctatgcttgtgagtcttgggttttagttggagcacgtgatcctcgagctataacagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8101615 |
gtcttcacaaaatccaaaatgcaactaattatgtgattggatcctatgcttttgagtcttgggttttagttggagcacgtgatcctcgagctataacagt |
8101714 |
T |
|
| Q |
218 |
ttttcccttagcagtacagaaaatacagcaatgaaatgcagattaagcaatctcagtcaatatcaggagcttctccaaatacaactttctacaaagtaac |
317 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8101715 |
tttttccttagcagtacagaaaatacagcaatgaagtgcagattaagcaatctcaatcaatatcaggagcttctccaaatacagctttctacaaagtaac |
8101814 |
T |
|
| Q |
318 |
tgtcatcactctcttcttcatc |
339 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
8101815 |
tgtcatcactctcttcttcatc |
8101836 |
T |
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