View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11247_low_18 (Length: 324)
Name: NF11247_low_18
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11247_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 98 - 305
Target Start/End: Original strand, 404085 - 404292
Alignment:
| Q |
98 |
tctctccaagagatggaacattcgtcctctatggcctttcgttcccgttatagacttcagcttttcaaccatattttttcctccatgtttcttgagcgag |
197 |
Q |
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| T |
404085 |
tctctccaagagatggaacattcgtcccctatggcctttcgttcccgttatagacttcagcgtttcaaccatattttttcctccatttttcttgagcgag |
404184 |
T |
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| Q |
198 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacgattcatttcaaattcctcaacaaatggatcaactatatatgctgataat |
297 |
Q |
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| T |
404185 |
aactcgttggttttcattccatcaacagtttcttcctcgacattgaatacaattcatttcaaattcctcaacaaatggttcaactatatatgctgttaat |
404284 |
T |
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| Q |
298 |
gtatctct |
305 |
Q |
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|||||||| |
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| T |
404285 |
gtatctct |
404292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 404043 - 404090
Alignment:
| Q |
14 |
agacaggttgagcagtttaccagatgagatcatttgccacattctctc |
61 |
Q |
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| T |
404043 |
agacaggttgagcagtttaccagatgagatcatttgccacattctctc |
404090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 975497 - 975456
Alignment:
| Q |
211 |
tcattccatcaacagtttcttcctcgacattgaatacgattc |
252 |
Q |
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| T |
975497 |
tcattccatcaacactttcatccttgacattgaatacgattc |
975456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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