View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11247_low_28 (Length: 245)
Name: NF11247_low_28
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11247_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 41606439 - 41606663
Alignment:
| Q |
1 |
gtttaaacattatttgtgacagttgtttaccaatttcctacctggaaaaatccatattgttcacaagcattggctagagactcaagagcttgtagcctat |
100 |
Q |
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| T |
41606439 |
gtttaaacattatttgtgacagttgtttaccaatttcctacctggaaaaatccatattgttcacaagcattggctagagactcaagagcttgtagcctat |
41606538 |
T |
|
| Q |
101 |
ttggaccaataagatcagtgaaatcaattatgggtagctgaagattttctttagcaacatttgaatcatcatccatactctttgtgggtctttctgaagc |
200 |
Q |
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| T |
41606539 |
ttggaccaataagatcagtgaaatcaattatgggtagctgaagattttctttagcaacatttgaatcatcatccatactctttgtgggtctttctgaagc |
41606638 |
T |
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| Q |
201 |
tggaaacatatacttctttggtacc |
225 |
Q |
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| T |
41606639 |
tggaaacatatacttctttggtacc |
41606663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 27122801 - 27122674
Alignment:
| Q |
40 |
acctggaaaaatccatattgttcacaagcattggctagagactcaagagcttgtagcctatttggaccaataagatcagtgaaatcaattatgggtagct |
139 |
Q |
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||||||||||||||||| ||||||||||||| || | || | |||| |||| |||||||||||||||| | ||||| |||||| || || |||| || |
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| T |
27122801 |
acctggaaaaatccataacgttcacaagcattagccaatgattgaagaacttggggcctatttggaccaatcaaatcagagaaatctatgattggtaact |
27122702 |
T |
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| Q |
140 |
gaagattttctttagcaacatttgaatc |
167 |
Q |
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| T |
27122701 |
gtaggttttgtttgccaaaatttgaatc |
27122674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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