View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11247_low_3 (Length: 755)

Name: NF11247_low_3
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11247_low_3
NF11247_low_3
[»] chr6 (24 HSPs)
chr6 (1-731)||(2601419-2602149)
chr6 (253-446)||(2574302-2574495)
chr6 (253-475)||(2617741-2617961)
chr6 (253-437)||(2583956-2584140)
chr6 (248-480)||(2678851-2679081)
chr6 (253-437)||(2646491-2646675)
chr6 (254-437)||(2431231-2431414)
chr6 (253-436)||(2447306-2447489)
chr6 (490-731)||(2573940-2574191)
chr6 (628-731)||(2678418-2678521)
chr6 (625-731)||(2646200-2646306)
chr6 (625-731)||(2447716-2447822)
chr6 (625-731)||(2618861-2618967)
chr6 (635-731)||(2431691-2431787)
chr6 (39-119)||(6820967-6821047)
chr6 (35-174)||(33234990-33235127)
chr6 (83-166)||(19294279-19294362)
chr6 (625-731)||(2585170-2585276)
chr6 (86-174)||(56894-56982)
chr6 (83-174)||(34011336-34011427)
chr6 (83-158)||(34013439-34013514)
chr6 (83-158)||(17539919-17539994)
chr6 (83-157)||(14494624-14494698)
chr6 (68-133)||(6812415-6812480)
[»] chr1 (4 HSPs)
chr1 (1-170)||(16426322-16426492)
chr1 (35-105)||(3387610-3387680)
chr1 (86-170)||(32740740-32740824)
chr1 (78-174)||(50127494-50127590)
[»] chr2 (10 HSPs)
chr2 (1-157)||(41848922-41849079)
chr2 (39-174)||(38783751-38783886)
chr2 (35-158)||(17651161-17651284)
chr2 (83-174)||(32201008-32201099)
chr2 (35-135)||(16661314-16661414)
chr2 (83-174)||(9929517-9929608)
chr2 (83-145)||(18724896-18724959)
chr2 (83-143)||(27003952-27004012)
chr2 (83-158)||(34409767-34409843)
chr2 (108-157)||(4748269-4748318)
[»] chr7 (9 HSPs)
chr7 (254-436)||(17874976-17875158)
chr7 (53-135)||(9730062-9730144)
chr7 (83-175)||(27616210-27616302)
chr7 (83-174)||(43837406-43837497)
chr7 (83-157)||(5741583-5741657)
chr7 (83-156)||(11812686-11812759)
chr7 (35-96)||(27993866-27993927)
chr7 (83-129)||(11820706-11820752)
chr7 (124-174)||(45216141-45216191)
[»] scaffold1723 (1 HSPs)
scaffold1723 (12-119)||(450-557)
[»] chr4 (4 HSPs)
chr4 (34-135)||(32593718-32593819)
chr4 (83-174)||(54305542-54305633)
chr4 (83-170)||(55680627-55680714)
chr4 (109-174)||(658632-658697)
[»] chr8 (8 HSPs)
chr8 (1-174)||(27401709-27401883)
chr8 (34-154)||(28867194-28867314)
chr8 (1-174)||(15850558-15850732)
chr8 (34-154)||(28869758-28869877)
chr8 (36-99)||(13097405-13097468)
chr8 (58-164)||(3159736-3159842)
chr8 (35-105)||(18393688-18393758)
chr8 (83-158)||(18603242-18603317)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-100)||(209151-209249)
[»] chr5 (4 HSPs)
chr5 (37-111)||(4111966-4112040)
chr5 (68-158)||(41815782-41815871)
chr5 (1-157)||(32676737-32676893)
chr5 (11-174)||(40837692-40837856)
[»] chr3 (4 HSPs)
chr3 (83-172)||(43922128-43922217)
chr3 (83-174)||(26565197-26565288)
chr3 (12-156)||(21408973-21409118)
chr3 (11-119)||(11410624-11410733)
[»] scaffold0325 (1 HSPs)
scaffold0325 (47-150)||(12788-12891)


Alignment Details
Target: chr6 (Bit Score: 679; Significance: 0; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 1 - 731
Target Start/End: Complemental strand, 2602149 - 2601419
Alignment:
Q  1 tgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  2602149 tgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgattcttaatttagatcttttataaataaattaatatata 2602050  T
Q  101 ggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgtatgtacttcatggtattggagagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  2602049 ggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgacgtgtccgtgtaactgtcgtgtcaggtgtctgtacttcatggtattggagagaaa 2601950  T
Q  201 gtaacactttaccgactaaattgatggtctattctttgcatatgataaactacagagggttattgttggacaagaacaggtgaaagacaagctgcaagaa 300  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2601949 gtaacactttaccgactaaattgatggtctgctctttgcatatgataaactacagagggttattgttggacaagaacagatgaaagacaagctgcaagaa 2601850  T
Q  301 tgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttgatttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatga 400  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2601849 tgagagttaggtacttaaaagcagttttaagacaagaagtagcatactttgatttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatga 2601750  T
Q  401 tagcctagtaattcaagatgttattagcgaaaaggtaccccaaaatataaattcattttactctatatcaatttttatttctatgtaggcccgagtttgg 500  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2601749 tagcctggtaattcaagatgttattagcgaaaaggtaccccaaaatataaattcattttactctatatcaatttttatttctatataggcccgagtttgg 2601650  T
Q  501 tctattatctgaccaaggctatttttaagtgtctggtccgacttatacccgaaaacccacttaaaggcctatttcgctttaaatttaatatgattatatt 600  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2601649 tctattatctgaccaagactatttttaagtgtctggtccgacttatacccgaaaacccacttaaaggcctatttcgctttaaatttaatatgattatatt 2601550  T
Q  601 tgtgacaaatagttaatttataagttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcat 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2601549 tgtgacaaatagttaatttataagttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcat 2601450  T
Q  701 cgttatggagattggcaattgttgggttccc 731  Q
    |||||||||||||||||||||||||||||||    
T  2601449 cgttatggagattggcaattgttgggttccc 2601419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 253 - 446
Target Start/End: Complemental strand, 2574495 - 2574302
Alignment:
Q  253 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||||    
T  2574495 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcaattctaagacaagatgtagcttactttga 2574396  T
Q  353 tttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctagtaattcaagatgttattagcgaaaaggtaccccaaaat 446  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  2574395 tttgcatattacaagcacatcagaagtcatcaccagtgtctccaatgatagcctcgtaattcaagatgttattagcgaaaaggtaccacaaaat 2574302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 253 - 475
Target Start/End: Original strand, 2617741 - 2617961
Alignment:
Q  253 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2617741 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtagcatactttga 2617840  T
Q  353 tttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctagtaattcaagatgttattagcgaaaaggtaccccaaaatataaat 452  Q
    ||||||||||||||||||||||||||||||||| |||||||| || || | ||||||||||||||||||| |||| |||||||||    |||||  ||||    
T  2617841 tttgcatgttacaagcacatcagaagtcatcacaagtgtctcaaacgacatcctagtaattcaagatgttcttagtgaaaaggta--taaaaattaaaat 2617938  T
Q  453 tcattttactctatatcaatttt 475  Q
    | |||||||| ||||||||||||    
T  2617939 ttattttactttatatcaatttt 2617961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 2583956 - 2584140
Alignment:
Q  253 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  2583956 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagctaggtacttaaaagcagttctaagacaagaagtagcatactttga 2584055  T
Q  353 tttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctagtaattcaagatgttattagcgaaaaggta 437  Q
    ||||||||||||||||||||||||||||||||| |||||||| || || | ||||||||||||||||||| |||| |||||||||    
T  2584056 tttgcatgttacaagcacatcagaagtcatcacaagtgtctctaacgacatcctagtaattcaagatgttcttagtgaaaaggta 2584140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 248 - 480
Target Start/End: Complemental strand, 2679081 - 2678851
Alignment:
Q  248 aactacagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatac 347  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  2679081 aacttcagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagctagatacttaaaagcagttctaagacaagaagtagcatac 2678982  T
Q  348 tttgatttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctagtaattcaagatgttattagcgaaaaggtaccccaaaata 447  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||| |||||||||||| |||| |||||||||    ||||||    
T  2678981 tttgatttgcatgttacaagcacatcagaagtcatcacaagtgtctctaacgacagcctagtgattcaagatgttcttagtgaaaaggta-taaaaaata 2678883  T
Q  448 taaattcattttactctatatcaatttttattt 480  Q
     |||||  ||||||| |||||||||||||||||    
T  2678882 -aaatttgttttactttatatcaatttttattt 2678851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 253 - 437
Target Start/End: Complemental strand, 2646675 - 2646491
Alignment:
Q  253 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  2646675 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtatcatactttga 2646576  T
Q  353 tttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctagtaattcaagatgttattagcgaaaaggta 437  Q
    ||||||| |||||||||||||||||||||||||||||||||| || || || || ||||||||||| ||| |||| |||||||||    
T  2646575 tttgcatattacaagcacatcagaagtcatcaccagtgtctctaacgacagtctggtaattcaagacgttcttagtgaaaaggta 2646491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 254 - 437
Target Start/End: Original strand, 2431231 - 2431414
Alignment:
Q  254 agagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttgat 353  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  2431231 agagggctattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtatcatactttgat 2431330  T
Q  354 ttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctagtaattcaagatgttattagcgaaaaggta 437  Q
    |||||||||||||||||| |||| |||||||||||||| || | ||| ||||||||||||||||||||| |||| || ||||||    
T  2431331 ttgcatgttacaagcacaacagatgtcatcaccagtgtatctagtgacagcctagtaattcaagatgttcttagtgacaaggta 2431414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 253 - 436
Target Start/End: Original strand, 2447306 - 2447489
Alignment:
Q  253 cagagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttga 352  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2447306 cagagggttattgttggacaagaacaggtgagagacaagctgcaagaatgagagttaggtacttaaaagcagttctaagacaagaagtagcatactttga 2447405  T
Q  353 tttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctagtaattcaagatgttattagcgaaaaggt 436  Q
    |||||| | |||||||| ||||||||||||||||| |||||| | ||| |||||| |||||||||||||  |||| ||||||||    
T  2447406 tttgcacggtacaagcatatcagaagtcatcaccaatgtctctagtgacagcctaataattcaagatgtccttagtgaaaaggt 2447489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 490 - 731
Target Start/End: Complemental strand, 2574191 - 2573940
Alignment:
Q  490 cccgagtttggtctattatctgaccaaggctattttt-aagtgtctggtccgacttatacccgaaaacccacttaaaggcctatttcgctttaaatttaa 588  Q
    |||||||||| ||||||| |||||| ||  ||||||| |||||||||  | ||||||| ||||||| || ||||||| || |||||| | |||||||| |    
T  2574191 cccgagtttgatctattacctgacctagattattttttaagtgtctgacctgacttatgcccgaaagcctacttaaaagcttatttcacattaaatttca 2574092  T
Q  589 tatgattatatttgtgaca------aatagttaattt---ataagttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaa 679  Q
    ||||||||||| | |||||      ||||||||||||   |||| |||||| |||  |||||||||||||||||||||||||  ||||||||||||||||    
T  2574091 tatgattatatatatgacattaacaaatagttaatttcttataatttgaaacttacgtaggttccaaattttttgatgaatgcatctatgttccttggaa 2573992  T
Q  680 gctacatagcagcatttgcatcgttatggagattggcaattgttgggttccc 731  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2573991 gctacatagcagcatttgcattgttatggagattggcaattgttgggttccc 2573940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 628 - 731
Target Start/End: Complemental strand, 2678521 - 2678418
Alignment:
Q  628 aaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttgggt 727  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||  |||||||||| |||||||||||| |||||||||||||    
T  2678521 aaaattatataggttccaaattttttgatgaatgcatctatgttcattggaagctacatagtggcatttgcattgttatggagattagcaattgttgggt 2678422  T
Q  728 tccc 731  Q
    ||||    
T  2678421 tccc 2678418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 625 - 731
Target Start/End: Complemental strand, 2646306 - 2646200
Alignment:
Q  625 ttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttg 724  Q
    ||||||| ||| |||||||||||||| ||||||||||  ||||||||| |||||||||| |||| ||||||| |||  |||||||||||||||||||| |    
T  2646306 ttgaaaactatgtaggttccaaatttgttgatgaatgcatctatgttcattggaagctatatagtagcatttacattattatggagattggcaattgtag 2646207  T
Q  725 ggttccc 731  Q
    |||||||    
T  2646206 ggttccc 2646200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 625 - 731
Target Start/End: Original strand, 2447716 - 2447822
Alignment:
Q  625 ttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttg 724  Q
    ||||||| |||| |||||||||||||||||| | |||| |||| |||| |||| | ||||||||  |||||||||| ||||||||||||||| |||||||    
T  2447716 ttgaaaactatacaggttccaaattttttgaagcatgtatctaagttcattgggaactacatagtggcatttgcattgttatggagattggccattgttg 2447815  T
Q  725 ggttccc 731  Q
    |||||||    
T  2447816 ggttccc 2447822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 625 - 731
Target Start/End: Original strand, 2618861 - 2618967
Alignment:
Q  625 ttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttg 724  Q
    ||||||| || ||||||||| |||||| ||||||||   ||||| ||| ||||| | |||||||  |||||||||| |||||||||||||||||||||||    
T  2618861 ttgaaaactacataggttccgaattttgtgatgaatacatctattttctttggaggatacatagtggcatttgcattgttatggagattggcaattgttg 2618960  T
Q  725 ggttccc 731  Q
    |||||||    
T  2618961 ggttccc 2618967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 635 - 731
Target Start/End: Original strand, 2431691 - 2431787
Alignment:
Q  635 tataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttgggttccc 731  Q
    |||||||||||||||||||| ||||||  |||| |||||||  |||| |||||| |||||||||||  |||||||||||||| |||||||| |||||    
T  2431691 tataggttccaaattttttggtgaatgcatctaggttcctttcaagcaacatagtagcatttgcattattatggagattggctattgttggattccc 2431787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 6821047 - 6820967
Alignment:
Q  39 tagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtcc 119  Q
    ||||||||||||| | |||||||| ||| ||||||||| |||| ||| |||||||||||||| |||| | |||||||||||    
T  6821047 tagatgcatatgtatatattttgattctaaatttagattttttataagtaaattaatatataagtagcgatgtcggtgtcc 6820967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 33234990 - 33235127
Alignment:
Q  35 aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatt 134  Q
    |||||||||||||  || ||||||||||   | ||||||||| |||| |||||||||||||| |||||||    ||||||||||| ||| ||||||||||    
T  33234990 aagttagatgcat--gtatgtattttgatgataaatttagatattttataaataaattaatacataggtaacaatgtcggtgtcctaggctttttacatt 33235087  T
Q  135 aacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |||  |||||| |||||  | ||| |||||| ||||||||    
T  33235088 aacgatgtcgacgtgtctctatcaatgtcgtatcaggtgt 33235127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 19294362 - 19294279
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtg 166  Q
    |||||||||||| ||||| |||| ||| ||||||||| |  |||||||||||| | |||||||||||| ||||||| |||||||    
T  19294362 taaataaattaacatatatgtagcggtatcggtgtcctatattttttacattagcggtgtcgatgtgttcgtgtcagtgtcgtg 19294279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 625 - 731
Target Start/End: Original strand, 2585170 - 2585276
Alignment:
Q  625 ttgaaaattatataggttccaaattttttgatgaatgtgtctatgttccttggaagctacatagcagcatttgcatcgttatggagattggcaattgttg 724  Q
    ||||||| || |||||||||  ||||||||||||||   ||||  ||| ||||| | |||||||  |||||||| | |||||||||||| ||||||||||    
T  2585170 ttgaaaactacataggttccggattttttgatgaatacatctaatttcattggaggatacatagtggcatttgctttgttatggagattagcaattgttg 2585269  T
Q  725 ggttccc 731  Q
    |||||||    
T  2585270 ggttccc 2585276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 56982 - 56894
Alignment:
Q  86 ataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    ||||||||| ||||| |||| |||||  |||||| |  ||||||| |||| | |||||||||||||||| ||| |||||||||||||||    
T  56982 ataaattaacatatatgtagcggtgttcgtgtcctatattttttatattagcggtgtcgatgtgtccgtatcaatgtcgtgtcaggtgt 56894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 34011336 - 34011427
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |||||||||||| ||||| |||  ||||||||||||| |  |||||||||||| | | ||||| |||||||||||| ||| |||||| ||||    
T  34011336 taaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggcgtcgacgtgtccgtgtcagtgttgtgtcacgtgt 34011427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 34013514 - 34013439
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 158  Q
    |||||||||||| ||||| |||  ||||||||||||| |  |||||||||||| | ||||||| ||||||||||||    
T  34013514 taaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtca 34013439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 17539994 - 17539919
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 158  Q
    |||||||||||| ||||| |||  ||||||||||||  |  |||||||||||||| |||||||  |||||||||||    
T  17539994 taaataaattaacatatatgtaatggtgtcggtgtcttatattttttacattaacggtgtcgacatgtccgtgtca 17539919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 14494624 - 14494698
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 157  Q
    |||||||||||| ||||| |||| |||||||||||||    | |||||||||| | ||||||| |||||||||||    
T  14494624 taaataaattaacatatatgtagcggtgtcggtgtcctgtatattttacattagcggtgtcgacgtgtccgtgtc 14494698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 6812480 - 6812415
Alignment:
Q  68 aatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacat 133  Q
    ||||||||| |||| ||| ||||||||||||||||||| | ||| ||||||| |  ||||||||||    
T  6812480 aatttagattttttataagtaaattaatatataggtagcgatgttggtgtcccattttttttacat 6812415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 16426492 - 16426322
Alignment:
Q  1 tgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatat 99  Q
    ||||||| | ||| || |||||||||||  |||| ||||||||||||||||| |||||||||| |||||||||| ||||||| |||||||||||||||||    
T  16426492 tgttatagaacttgttttaatgaagtaaattgctcaagttagatgcatatgtatgtattttgattcttaatttatatcttttataaataaattaatatat 16426393  T
Q  100 aggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 170  Q
    |||||| |||||| |||||| | | ||||||||||||| |||| || |||||||||||| ||| |||||||    
T  16426392 aggtagcggtgtcagtgtcctatgctttttacattaacggtgttgacgtgtccgtgtcagtgttgtgtcag 16426322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 3387680 - 3387610
Alignment:
Q  35 aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtag 105  Q
    |||||| |||||||||| |||||||||| ||| ||||||||| |||| |||||||||||||||||| ||||    
T  3387680 aagttaaatgcatatgtatgtattttgattctcaatttagatattttataaataaattaatatataagtag 3387610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 32740824 - 32740740
Alignment:
Q  86 ataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 170  Q
    ||||||||| ||||| |||| |||||| |||||| |  ||||||||||||| ||||||||| || |||||||| |||||||||||    
T  32740824 ataaattaacatatatgtagtggtgtcagtgtcctatattttttacattaatagtgtcgatatgaccgtgtcagtgtcgtgtcag 32740740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 50127494 - 50127590
Alignment:
Q  78 ttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |||| ||||||||||||||||||| ||| |||| || ||||| | ||||||||||||| |||| |||| |||||||  | | | |||||||||||||    
T  50127494 ttttataaataaattaatatatagatagcggtggcgatgtcctatgttttttacattagcagtatcgacgtgtccggattagtatcgtgtcaggtgt 50127590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 41849079 - 41848922
Alignment:
Q  1 tgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatat 99  Q
    ||||||| |||||||| ||||||| |||  |||| ||||||||| ||||||| |||||||||| ||| ||||||||| |||| |||||||||||||||||    
T  41849079 tgttatagacctttttttaatgaaataaagtgctcaagttagattcatatgtatgtattttgattctcaatttagatattttataaataaattaatatat 41848980  T
Q  100 aggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 157  Q
    || ||| ||||||||||||| |  |||||||||||| | ||||||||||||| |||||    
T  41848979 agatagcggtgtcggtgtcctatattttttacattagcggtgtcgatgtgtcagtgtc 41848922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 39 - 174
Target Start/End: Original strand, 38783751 - 38783886
Alignment:
Q  39 tagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaaca 138  Q
    |||||| |||||| |||||||||| ||| |||| |||| |||| ||||||||||||||||||| |||  | ||||||||||   |  |||||||||| ||    
T  38783751 tagatgtatatgtatgtattttgattctcaattcagatattttataaataaattaatatatagatagcagcgtcggtgtcctctgacttttacattagca 38783850  T
Q  139 gtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
     ||||||||||||||||||| | |||||||||||||    
T  38783851 atgtcgatgtgtccgtgtcagtatcgtgtcaggtgt 38783886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 17651284 - 17651161
Alignment:
Q  35 aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatt 134  Q
    ||||||||||||||||| |||||||||  | |||||||||||||| | |||||||||||||||||||  || |||||| || ||| | |||||||| |||    
T  17651284 aagttagatgcatatgtatgtattttggtttttaatttagatcttatataaataaattaatatatagccagcggtgtcagtatcctatgttttttatatt 17651185  T
Q  135 aacagtgtcgatgtgtccgtgtca 158  Q
    | |  |||||| |||| |||||||    
T  17651184 agcgatgtcgacgtgttcgtgtca 17651161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 32201008 - 32201099
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |||||||||||| |||||  ||  ||||||||||||| |  |||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  32201008 taaataaattaacatatatttaatggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgt 32201099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 16661314 - 16661414
Alignment:
Q  35 aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatt 134  Q
    ||||||||| || |||| |||||| ||| ||| |||||||||||||| || || |||||||||||| |||| ||| ||||||||| | |||| |||||||    
T  16661314 aagttagatacacatgtatgtattctgattctcaatttagatcttttatacatgaattaatatatatgtagcggtatcggtgtccaatgtttattacatt 16661413  T
Q  135 a 135  Q
    |    
T  16661414 a 16661414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 9929608 - 9929517
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |||||||||||| ||||| ||||  |||| ||||||| |  |||||||||||| | ||||||| |||||||||||| |||||||||| ||||    
T  9929608 taaataaattaacatatatgtagcagtgttggtgtcctatattttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaagtgt 9929517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 18724896 - 18724959
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccga-ggttttttacattaacagtgtcga 145  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||||||||| | |||||||    
T  18724896 taaataaattaatatataggtagcggtgtcggtgtcctatggttttttacattatcggtgtcga 18724959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 27004012 - 27003952
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtc 143  Q
    |||||||||||| ||||| |||| ||||||||||||| |  ||||||||||||||||||||    
T  27004012 taaataaattaacatatacgtagcggtgtcggtgtcctatattttttacattaacagtgtc 27003952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 34409767 - 34409843
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggtttt-ttacattaacagtgtcgatgtgtccgtgtca 158  Q
    ||||||||||||||||||  ||  ||||||||||||| || |||| |||||||| | ||||||||||||||||||||    
T  34409767 taaataaattaatatatatctaatggtgtcggtgtcctagatttttttacattagcggtgtcgatgtgtccgtgtca 34409843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 4748269 - 4748318
Alignment:
Q  108 gtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 157  Q
    |||||||||||| |  |||||||||||| | |||||||||||||||||||    
T  4748269 gtgtcggtgtcctatattttttacattagcggtgtcgatgtgtccgtgtc 4748318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 9e-32; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 254 - 436
Target Start/End: Complemental strand, 17875158 - 17874976
Alignment:
Q  254 agagggttattgttggacaagaacaggtgaaagacaagctgcaagaatgagagttaggtacttaaaagcggttctaagacaagaagtagcatactttgat 353  Q
    |||||| |||||||||||||| ||| ||| ||||||||||||||||||||||   | |||||||||||| || || || |||||||| || || ||||||    
T  17875158 agagggatattgttggacaaggacaagtggaagacaagctgcaagaatgagatacaagtacttaaaagcagtacttaggcaagaagttgcttattttgat 17875059  T
Q  354 ttgcatgttacaagcacatcagaagtcatcaccagtgtctccaatgatagcctagtaattcaagatgttattagcgaaaaggt 436  Q
    ||||| ||||||||||| |||||| ||||||| |||||||| ||||| |   | ||||||||||||||| |||| || |||||    
T  17875058 ttgcaggttacaagcacctcagaaatcatcactagtgtctctaatgacactattgtaattcaagatgttcttagtgagaaggt 17874976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 9730062 - 9730144
Alignment:
Q  53 tgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacatta 135  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||||||| |||||| |||| | |  ||||||||||||    
T  9730062 tgtattttggttcttaatttagatcttttataaataaattaatatataggtagcggtgtcagtgttctatattttttacatta 9730144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 175
Target Start/End: Complemental strand, 27616302 - 27616210
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgta 175  Q
    |||||||||||| ||| | |||| |||||||||||||    |||||||||||||| |||||||  ||||||||||| | ||||||||||||||    
T  27616302 taaataaattaacatacatgtagcggtgtcggtgtcctgtattttttacattaacggtgtcgacatgtccgtgtcagtatcgtgtcaggtgta 27616210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 43837406 - 43837497
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |||||||||||||||||  |||| ||||||  |||||   ||||||||||||| ||||||||| |||||||||||| ||| |||| ||||||    
T  43837406 taaataaattaatatatgtgtagtggtgtcaatgtcctgagttttttacattagcagtgtcgaggtgtccgtgtcagtgttgtgtaaggtgt 43837497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 5741657 - 5741583
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 157  Q
    ||||| |||||||||||  |||| ||||||||||| | | |||||||||||||||||||| |||||||| |||||    
T  5741657 taaattaattaatatatgtgtagcggtgtcggtgttctaagttttttacattaacagtgttgatgtgtcagtgtc 5741583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 11812686 - 11812759
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgt 156  Q
    |||||||||||||||||||||||  |||||||||||| | ||||||||||||| | ||||| | ||||| ||||    
T  11812686 taaataaattaatatataggtagctgtgtcggtgtcctatgttttttacattagcggtgtcaacgtgtctgtgt 11812759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 27993927 - 27993866
Alignment:
Q  35 aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaata 96  Q
    |||||| |||||||||| |||||||||| ||||| |||| ||||||| ||||||||||||||    
T  27993927 aagttaaatgcatatgtatgtattttgattcttagtttatatcttttataaataaattaata 27993866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 11820706 - 11820752
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggtttttt 129  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||    
T  11820706 taaataaattaatatataggtagtggtgtcggtgtcctatgtttttt 11820752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 45216141 - 45216191
Alignment:
Q  124 ttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  45216141 ttttttacattagcggtgtcgacgtgtccgtgtcagtgtcgtgtcaggtgt 45216191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1723 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 450 - 557
Alignment:
Q  12 tttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtg 110  Q
    ||||| ||||||| |||| |||| ||||||||||||||| | |||||||||| |||||||| ||||||||| ||||||||||||||||||| ||| ||||    
T  450 tttttttaatgaaataatttgctcaagttagatgcatat-tatgtattttgattcttaattaagatcttttataaataaattaatatatagatagcggtg 548  T
Q  111 tcggtgtcc 119  Q
    |||||||||    
T  549 tcggtgtcc 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 32593819 - 32593718
Alignment:
Q  34 taagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacat 133  Q
    |||||||||||||||||| |||||||||| || ||||||||||| ||| ||||||||||| |||| |||||| |||||| |||||| | | |||||||||    
T  32593819 taagttagatgcatatgtgtgtattttgattcataatttagatcatttataaataaattagtatacaggtagcggtgtcagtgtcctatggtttttacat 32593720  T
Q  134 ta 135  Q
    ||    
T  32593719 ta 32593718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 54305633 - 54305542
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |||||||||||| ||||| |||| ||||||||||||| |   ||||||||||| |  |||||| |||||||||||| ||| |||||||||||    
T  54305633 taaataaattaacatatatgtagcggtgtcggtgtcctataatttttacattagcgatgtcgacgtgtccgtgtcagtgttgtgtcaggtgt 54305542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 55680714 - 55680627
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcag 170  Q
    |||||||||||| ||||| |||  ||||||||||||| |  |||||||||||| | ||||||| |||||||| ||| |||||||||||    
T  55680714 taaataaattaacatataagtaacggtgtcggtgtcctatattttttacattagcggtgtcgacgtgtccgtatcagtgtcgtgtcag 55680627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 658632 - 658697
Alignment:
Q  109 tgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    ||||||||||| || |||||||||||| |||||| || || ||||||||| ||||||||| |||||    
T  658632 tgtcggtgtcctagattttttacattagcagtgttgacgtatccgtgtcagtgtcgtgtcgggtgt 658697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 27401883 - 27401709
Alignment:
Q  1 tgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatat 99  Q
    ||||||||| |||||| ||||||| |||  |||| |||||||||||| |||| | |||||||| ||| |||| |||  |||| |||||||||||||||||    
T  27401883 tgttatataactttttttaatgaaataaattgctcaagttagatgcagatgtatatattttgattctcaattgagacattttataaataaattaatatat 27401784  T
Q  100 aggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    || ||| ||| | || |||| | ||||||||||||| | |||| |  |||||||||||| |||| | ||||||||    
T  27401783 agatagcggtattggcgtcctatgttttttacattagcggtgttggcgtgtccgtgtcagtgtcctatcaggtgt 27401709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 28867314 - 28867194
Alignment:
Q  34 taagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacat 133  Q
    |||||||||||||||| | |||||||||| ||| |||||| || |||| ||||||||||||||||||| |||  |||| ||||||  | ||||| |||||    
T  28867314 taagttagatgcatatatatgtattttgattctcaatttaaatgttttataaataaattaatatatagatagtagtgttggtgtcttatgttttatacat 28867215  T
Q  134 taacagtgtcgatgtgtccgt 154  Q
    ||   ||||||||||||||||    
T  28867214 tagttgtgtcgatgtgtccgt 28867194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 15850558 - 15850732
Alignment:
Q  1 tgttatatacctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatat 99  Q
    |||| |||| |||||||||||||| |||| |||| || |||||| | ||| | |||||||||| | | | ||||||   | | |||||||||||||||||    
T  15850558 tgttttataactttttctaatgaaataatttgctcaaattagatacttatatatgtattttgattttcattttagactatctataaataaattaatatat 15850657  T
Q  100 aggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |  ||  ||||||||||||| |  ||||||||| |||||||||||| |||||| | ||| |||||||||||||||    
T  15850658 acataatggtgtcggtgtcctatattttttacactaacagtgtcgaagtgtccatatcagtgtcgtgtcaggtgt 15850732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 28869877 - 28869758
Alignment:
Q  34 taagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacat 133  Q
    |||||||||||||||||| |||||||||| ||| |||||| || |||| ||||||||||||||||||| |||  ||||  |||||  | | ||||||| |    
T  28869877 taagttagatgcatatgtatgtattttgattctcaatttaaatattttataaataaattaatatatagatagtagtgtttgtgtcttatg-tttttacgt 28869779  T
Q  134 taacagtgtcgatgtgtccgt 154  Q
    || | ||||||||||||||||    
T  28869778 tagctgtgtcgatgtgtccgt 28869758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 13097468 - 13097405
Alignment:
Q  36 agttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatat 99  Q
    |||||||||||||||| |||||||||| ||| ||||||||| |||| |||||||||||||||||    
T  13097468 agttagatgcatatgtatgtattttgattctcaatttagatattttataaataaattaatatat 13097405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 3159842 - 3159736
Alignment:
Q  58 tttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 157  Q
    ||||| ||| |||||||||||||  ||||||||||| |||| ||||||  |||||||||||| | ||||||||||||| | ||||  | ||||| |||||    
T  3159842 tttgattctcaatttagatctttcataaataaattagtatacaggtagcagtgtcggtgtcctatgttttttacattagcggtgttaacgtgtcagtgtc 3159743  T
Q  158 actgtcg 164  Q
    | |||||    
T  3159742 agtgtcg 3159736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 18393688 - 18393758
Alignment:
Q  35 aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtag 105  Q
    |||||| |||||||||| |||||| ||| ||| ||||||||| |||| ||| |||||||||||||| ||||    
T  18393688 aagttaaatgcatatgtatgtattatgattctcaatttagatattttataagtaaattaatatataagtag 18393758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 18603242 - 18603317
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 158  Q
    |||||||||||| || || ||||||||| |||||||| |  ||||||||| |||| ||||||| ||||| ||||||    
T  18603242 taaataaattaacatgtatgtagaggtgccggtgtcctatattttttacactaacggtgtcgaagtgtctgtgtca 18603317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 209249 - 209151
Alignment:
Q  1 tgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatata 100  Q
    ||||||| | |||||| ||||||| |||  ||||| ||||||||||||||| |||||||||| ||| ||||||||| |||| ||||||||||||||||||    
T  209249 tgttatagaactttttttaatgaaataaattgcta-gttagatgcatatgtatgtattttgattctcaatttagatattttataaataaattaatatata 209151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 4112040 - 4111966
Alignment:
Q  37 gttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgt 111  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||| || ||||||||||||||| |||| |||||    
T  4112040 gttagatgcatatgtatgtattttgattctcaatttagatcttttatatataaattaatatataagtagcggtgt 4111966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 41815782 - 41815871
Alignment:
Q  68 aatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtca 158  Q
    ||||| |||||||| |||||||||||||||||| |||| ||||||||||||| |  |||||||||||| | ||||| |  |||||||||||    
T  41815782 aatttggatcttttataaataaattaatatatatgtagcggtgtcggtgtccta-tttttttacattagcggtgtctaattgtccgtgtca 41815871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 32676737 - 32676893
Alignment:
Q  1 tgttatatacctttttctaatgaagtaatctgctaagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatata 100  Q
    |||| |||| |||||||||||||| |||  |||| | |||||||| ||||| |||||||||| | | | |||||| | | |  ||||||||||| |||||    
T  32676737 tgttttataactttttctaatgaaataaattgctcaattagatgcttatgtatgtattttgattttcattttagaccgtctaaaaataaattaacatata 32676836  T
Q  101 ggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtc 157  Q
     ||||  | |||||||||| |  |||||||||||| | ||||||| ||||| |||||    
T  32676837 tgtagcagggtcggtgtcctattttttttacattagcggtgtcgacgtgtcagtgtc 32676893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 40837856 - 40837692
Alignment:
Q  11 ctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggt 109  Q
    |||||||||||||| |||| |||| ||||||||||| ||| | |||||||||| | | | |||||| | | | |||||||||||| |||||  ||| |||    
T  40837856 ctttttctaatgaaataatttgctcaagttagatgcttatatatgtattttgattttcattttagaccgtatataaataaattaacatatatctagcggt 40837757  T
Q  110 gtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    ||| |||||  |  ||||||||| || | || || | |||||||||||| | |||||||||||||    
T  40837756 gtcagtgtcttatattttttacactagcggtatcaaagtgtccgtgtcattatcgtgtcaggtgt 40837692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 43922128 - 43922217
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggt 172  Q
    |||||||||||| || || |||||||||||||||||| |  ||||||||| || | ||||||| |||||||||||| |||||||||||||    
T  43922128 taaataaattaacatgtatgtagaggtgtcggtgtcctatattttttacactagcggtgtcgaagtgtccgtgtcagtgtcgtgtcaggt 43922217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 26565288 - 26565197
Alignment:
Q  83 taaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgtcactgtcgtgtcaggtgt 174  Q
    |||||||||||| ||||| |||  |||||| ||||||    |||||||||||| | ||||||| |||||||||||| |||||||||||||||    
T  26565288 taaataaattaacatatatgtaacggtgtcagtgtcctgtattttttacattagcggtgtcgaagtgtccgtgtcagtgtcgtgtcaggtgt 26565197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 21408973 - 21409118
Alignment:
Q  12 tttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtg 110  Q
    ||||||||||||| |||  |||| || |||||| | ||| |||||||||||| | | | |||||| | | | |||||||||||| ||||| |||| ||||    
T  21408973 tttttctaatgaaataacttgctcaaattagattcttatatttgtattttgattttcattttagaccgtatataaataaattaacatatatgtagcggtg 21409072  T
Q  111 tcggtgtccgaggttttttacattaacagtgtcgatgtgtccgtgt 156  Q
    || || ||| |  |||||||||||||| ||||| ||||||| ||||    
T  21409073 tcagtatcctatattttttacattaacggtgtcaatgtgtctgtgt 21409118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 11410733 - 11410624
Alignment:
Q  11 ctttttctaatgaagtaatctgct-aagttagatgcatatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggt 109  Q
    |||||||||||||| |||  |||| ||||||||||| ||  | |||||||||| | | | |||||| | | | |||||||||||| ||||| |||| |||    
T  11410733 ctttttctaatgaaataacttgctcaagttagatgcttaaatatgtattttgattttcattttagaccgtatataaataaattaacatatatgtagcggt 11410634  T
Q  110 gtcggtgtcc 119  Q
    ||||||||||    
T  11410633 gtcggtgtcc 11410624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 12891 - 12788
Alignment:
Q  47 tatgtttgtattttgactcttaatttagatcttttgtaaataaattaatatataggtagaggtgtcggtgtccgaggttttttacattaacagtgtcgat 146  Q
    |||||||||||||||| | | | |||||  ||| |||||||||||||||||||| |||| |||||||||||||    |||||||||||| |||||||| |    
T  12891 tatgtttgtattttgattttcattttaggccttctgtaaataaattaatatatatgtagcggtgtcggtgtcctgtattttttacattagcagtgtcggt 12792  T
Q  147 gtgt 150  Q
    ||||    
T  12791 gtgt 12788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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