View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11247_low_33 (Length: 215)

Name: NF11247_low_33
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11247_low_33
NF11247_low_33
[»] chr7 (13 HSPs)
chr7 (16-212)||(4643067-4643263)
chr7 (19-211)||(4672006-4672198)
chr7 (19-213)||(4666301-4666495)
chr7 (19-213)||(4661170-4661364)
chr7 (13-213)||(4652880-4653080)
chr7 (19-213)||(4630275-4630469)
chr7 (13-196)||(4636217-4636400)
chr7 (13-202)||(4784402-4784591)
chr7 (13-202)||(4816831-4817020)
chr7 (13-202)||(4863249-4863438)
chr7 (16-202)||(4697757-4697943)
chr7 (95-211)||(4846579-4846695)
chr7 (36-158)||(4712677-4712799)
[»] chr4 (1 HSPs)
chr4 (13-213)||(18926295-18926495)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 4643067 - 4643263
Alignment:
Q  16 tcattcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgccaa 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||| || || |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4643067 tcattcatgaactcgttggcaccttgttgagagcccgatttgaggcgcttaaccgcaacaagtgtggatccatcaacacaacctttgtacacgttgccaa 4643166  T
Q  116 accctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggggcggcaaaga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4643167 accctccaactccgatgataaaagcatcatcgaagttgtttgtagctgctttgatctctgcgattgtaaaggagcggcacagatggggcggcaaaga 4643263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 4672006 - 4672198
Alignment:
Q  19 ttcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgccaaacc 118  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||    
T  4672006 ttcatgaactcgttggcaccttgctgagagcccgatttgagccgttttatggcaacaagtgtggatccatcgacacaacctttgtacaggtttccaaacc 4672105  T
Q  119 ctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggggcggcaaag 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||    
T  4672106 ctccaactccgatgatagaagcatcatcgaagttgtttgtggctgctttgatctctgcgattgtaaaggaacggcacaagtggggcggcaaag 4672198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 4666301 - 4666495
Alignment:
Q  19 ttcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgccaaacc 118  Q
    ||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4666301 ttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatggcaacaagtgtggatccatcgacacaacctttgtacacgttgccaaacc 4666400  T
Q  119 ctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggggcggcaaagat 213  Q
    |||||||||||||||| ||| |||| || |||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  4666401 ctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctctgatctctgcaattgtaaaggaccggcacaaatggggcggcaaagat 4666495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 4661170 - 4661364
Alignment:
Q  19 ttcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgccaaacc 118  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4661170 ttcatgaactcgttgacaccttgttgagagcccgatttgaggcgtttaatcgcaacaagtgttgatccatcaacacaacctttgtacacgttgccaaacc 4661269  T
Q  119 ctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggggcggcaaagat 213  Q
    |||||||||| ||||| ||| ||||||| ||||| |||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||    
T  4661270 ctccaactccaatgatgaaatcatcatcaaagttttttgtggctgctctgatctctgcaattgtaaagtagcggcacaaatggggcggcaaagat 4661364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 4652880 - 4653080
Alignment:
Q  13 atctcattcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgc 112  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||| |  |||||||||| |  |||||||||||||||||||    
T  4652880 atctcattcatgaactcgttggcaccttgttgagagccagatttgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgc 4652979  T
Q  113 caaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggggcggcaaaga 212  Q
    |||| |||||||| |||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||| ||| || ||||||||    
T  4652980 caaatcctccaacaccgatgatgaaaacatcatcgaagttatttgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaaga 4653079  T
Q  213 t 213  Q
    |    
T  4653080 t 4653080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 4630275 - 4630469
Alignment:
Q  19 ttcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgccaaacc 118  Q
    ||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||    
T  4630275 ttcatgaactcgttggcaccttgttgagagcctgatttgaggcgttttatcgcaacaggtgtggatccatcgacacaacctttgtacacgttcccaaacc 4630374  T
Q  119 ctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggggcggcaaagat 213  Q
    |||||| ||||||||| ||| |||  || |||||||||||||||||||||||||| || ||||||||| |||| |||| ||| ||| ||| ||||    
T  4630375 ctccaaatccgatgatgaaatcattgtcaaagttgtttgtggctgctttgatctccgcgattgtaaagtagcgacacaaatgcggctgcagagat 4630469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 4636217 - 4636400
Alignment:
Q  13 atctcattcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgc 112  Q
    ||||| ||||||| ||| || ||||||||||||||||||||  |||| |||||||| |||||  |||||||||||||||   ||||||||||||| || |    
T  4636217 atctcgttcatgaactcatttgcaccttgttgagagcccgacctgaggcgttttatcgcaacgggtgtggatccatcaatgaaacctttgtacacattcc 4636316  T
Q  113 caaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcaca 196  Q
    ||||||| ||||| ||||| ||     ||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||    
T  4636317 caaaccccccaacaccgataatgttttcatcatcgaagttttttgtggctgctctgatctctgcgattgtaaagtagcggcaca 4636400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 4784591 - 4784402
Alignment:
Q  13 atctcattcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgc 112  Q
    |||||||||| || ||||||  ||||||||||||| || | ||| || |||||||| |||||  ||||   |||||||| | ||||||||||||| ||||    
T  4784591 atctcattcaagaactcgttcacaccttgttgagaacctggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgc 4784492  T
Q  113 caaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggg 202  Q
    | ||||||||||| ||||||||||||  ||| |||||||||||||| |||||||| || || || ||||||||  ||||||||| |||||    
T  4784491 cgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatggg 4784402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 4817020 - 4816831
Alignment:
Q  13 atctcattcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgc 112  Q
    |||||||||| || ||||||  ||||||||||||| || | ||| || |||||||| |||||  ||||   |||||||| | ||||||||||||| ||||    
T  4817020 atctcattcaagaactcgttaacaccttgttgagaaccaggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgc 4816921  T
Q  113 caaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggg 202  Q
    | ||||||||||| ||||||||||||  ||| |||||||||||||| |||||||| || || || ||||||||  ||||||||| |||||    
T  4816920 cgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatggg 4816831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 4863249 - 4863438
Alignment:
Q  13 atctcattcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgc 112  Q
    ||||||||||||| ||| ||   |||||||||||| || | ||| || |||||||| |||||| || ||  |||||||| | ||||||||||||||||||    
T  4863249 atctcattcatgaactcatttataccttgttgagaacctggtttaagacgttttatcgcaacaggtatgtctccatcaatataacctttgtacacgttgc 4863348  T
Q  113 caaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggg 202  Q
    | |||||||||||||| ||||| |||  ||| || ||||||||||| || ||| | |||||||  ||||||||  ||||||||| |||||    
T  4863349 cgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggcacaaatggg 4863438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 4697943 - 4697757
Alignment:
Q  16 tcattcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgccaa 115  Q
    |||||||||| ||||||  ||||||||||||| |||| ||| |  |||||||| || ||| ||||   | |||| |   |||||||| ||||||| ||||    
T  4697943 tcattcatgaactcgtttacaccttgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaa 4697844  T
Q  116 accctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggg 202  Q
    ||||||||||||| |||||||||  ||| |||||||||||||| || ||| | ||||| || ||||||||  ||||||||| |||||    
T  4697843 accctccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatggg 4697757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 4846695 - 4846579
Alignment:
Q  95 aacctttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggca 194  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||  ||| |||||||||||||| ||| || | ||||| || ||||||||  |||||||    
T  4846695 aacctttgtacacgttgccgaaccctccagctccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggca 4846596  T
Q  195 cagatggggcggcaaag 211  Q
    || ||||| ||| ||||    
T  4846595 caaatgggacggtaaag 4846579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 4712799 - 4712677
Alignment:
Q  36 accttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgccaaaccctccaactccgatgata 135  Q
    ||||||| |||| ||| ||||  | |||||||| |||||| || ||  ||||||||   ||||||||||||||||||| || |||||||| |||||||||    
T  4712799 accttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgata 4712700  T
Q  136 aaagcatcatcgaagttgtttgt 158  Q
    |||  ||| ||||||||||||||    
T  4712699 aaaatatcttcgaagttgtttgt 4712677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 18926495 - 18926295
Alignment:
Q  13 atctcattcatgagctcgttggcaccttgttgagagcccgatttgagccgttttatggcaacaagtgtggatccatcaacacaacctttgtacacgttgc 112  Q
    ||||||||||||| ||||||||| |||||||||||||| | |||||| |||||||| |||||  ||||||||  ||| |   ||||||| ||||||||||    
T  18926495 atctcattcatgaactcgttggccccttgttgagagcctggtttgagacgttttattgcaacgggtgtggatttatcgatgaaacctttatacacgttgc 18926396  T
Q  113 caaaccctccaactccgatgataaaagcatcatcgaagttgtttgtggctgctttgatctctgcaattgtaaaggagcggcacagatggggcggcaaaga 212  Q
    |||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||    
T  18926395 caaaccctccaactccgatgattaaatcatcatcaaagttatttgtggctgcttttatctctgcaattgtaaagtagcggcacaaatggggcggtaaaga 18926296  T
Q  213 t 213  Q
    |    
T  18926295 t 18926295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University