View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11247_low_5 (Length: 505)
Name: NF11247_low_5
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11247_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 55 - 496
Target Start/End: Complemental strand, 54986991 - 54986562
Alignment:
| Q |
55 |
tgtcttgcatatagatatagcagcttctaaactacacattactgtttggcctgtagaaataattaaaaagaaacaaacagattagtttggtctcaagtat |
154 |
Q |
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| T |
54986991 |
tgtcttgcatatagatatagcagcttctaaactagtcattactgtttggcctgtagaaataattaaaaagtaacaaacagattagtttcgtcacaagtat |
54986892 |
T |
|
| Q |
155 |
tgagaaatatagttttatttttgacacacgtgcgcgcacgcacatgttgcacatgtatatgtaaaatgaacgaacataaaaaatagtgaatggttatact |
254 |
Q |
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| T |
54986891 |
tgagaaatatagttttattgttgacacacgtgcgcg-----------tgcacatgtatatataaaatgaacgagcataaaaaatagtgaatggttatact |
54986803 |
T |
|
| Q |
255 |
taataagaaaacaaaaatagaaggaaaaaggaatgcacctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaa |
354 |
Q |
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| T |
54986802 |
taataagaaaacaaaaatagaaggaaaa-ggaatgcacctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaa |
54986704 |
T |
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| Q |
355 |
ttggtgtgtggaagataatgatcgaagagacaataaccgagattctcttcatcgtgttccctatgctaaatgttaatggagaaatctgatccagagacat |
454 |
Q |
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| T |
54986703 |
ttggtgtgtggaagataatgatcgaagagacaataaccgagattctcttcatcgtgttccctatgctaaatgttaatggagaaatctgatccagagacat |
54986604 |
T |
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| Q |
455 |
ataagagacttgattgtacaagtgatagaacacactctgtgc |
496 |
Q |
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| T |
54986603 |
ataagagacttgattgtacaagtgatagaacacactctgtgc |
54986562 |
T |
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Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 285 - 490
Target Start/End: Complemental strand, 7884096 - 7883891
Alignment:
| Q |
285 |
gaatgcacctgtgaatagaggaaggtgccgaggattgcaattgcagcaccaagggcattgtttggctgaattggtgtgtggaagataatgatcgaagaga |
384 |
Q |
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|||| |||||||||||||| ||||||||| || |||||||| ||||| ||||| |||||| | || |||| ||||||||| ||||||||||| ||||||| |
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| T |
7884096 |
gaattcacctgtgaatagatgaaggtgccaagaattgcaatggcagctccaagagcattgatgggttgaagtggtgtgtgaaagataatgatggaagaga |
7883997 |
T |
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| Q |
385 |
caataaccgagattctcttcatcgtgttccctatgctaaatgttaatggagaaatctgatccagagacatataagagacttgattgtacaagtgatagaa |
484 |
Q |
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| T |
7883996 |
ctattacagaaattctcttcattgtatttcctatgctaaatgttaagggagaaatctgatcaagagacatgtatgacacttgattatataaatggtagaa |
7883897 |
T |
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| Q |
485 |
cacact |
490 |
Q |
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| T |
7883896 |
cacact |
7883891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 493
Target Start/End: Complemental strand, 18397862 - 18397690
Alignment:
| Q |
321 |
gcaattgcagcaccaagggcattgtttggctgaattggtgtgtggaagataatgatcgaagagacaataaccgagattctcttcatcgtgttccctatgc |
420 |
Q |
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| T |
18397862 |
gcaattgcggctccaagagcattgacaggctgaattggtgtatggaagatgataattgaagatactatgacagatatacgtttcatggtgtttccaatgc |
18397763 |
T |
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| Q |
421 |
taaatgttaatggagaaatctgatccagagacatataagagacttgattgtacaagtgatagaacacactctg |
493 |
Q |
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| T |
18397762 |
taaatgttaggggagagatctcatccaacgacatgtaagacacctgattgtatagatgatagaatatactctg |
18397690 |
T |
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