View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11247_low_6 (Length: 491)

Name: NF11247_low_6
Description: NF11247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11247_low_6
NF11247_low_6
[»] chr7 (2 HSPs)
chr7 (121-463)||(42537801-42538155)
chr7 (215-358)||(22956488-22956630)
[»] chr3 (4 HSPs)
chr3 (360-474)||(37464850-37464975)
chr3 (212-358)||(20761082-20761231)
chr3 (207-314)||(50558306-50558413)
chr3 (329-358)||(50558415-50558444)
[»] chr8 (1 HSPs)
chr8 (278-358)||(24053511-24053593)
[»] chr6 (2 HSPs)
chr6 (215-357)||(1933303-1933447)
chr6 (211-358)||(17725020-17725169)
[»] chr2 (3 HSPs)
chr2 (370-416)||(40894743-40894789)
chr2 (425-463)||(40894809-40894847)
chr2 (425-474)||(36666276-36666325)
[»] chr1 (1 HSPs)
chr1 (425-474)||(36575475-36575524)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 121 - 463
Target Start/End: Complemental strand, 42538155 - 42537801
Alignment:
Q  121 tgttacggagatactcgttaacaaaaccattttctaatattagttggagaccgttattaggccaacaaacatgattaaaataaaaaattatcagccttgc 220  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || | | |||||||||||||||||||||||||||||||||||||||||||||||    
T  42538155 tgttacggagatactcgttaacaaaaccattt-ctaatattagttagaaatcattattaggccaacaaacatgattaaaataaaaaattatcagccttgc 42538057  T
Q  221 tatatagtgcgaaatatatgcgcacgactacacaagataaaaggttggtaggatttttacattttaaaaataaatag--ttaaaacacagcctaaatcca 318  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  42538056 tatatagtgcgaaatatatgcgcacgactacacacgataaaaggttggtaggatttttacattttaaaaataaatagagttaaaacacagcctaaatcca 42537957  T
Q  319 atggttatggtatataatcctatggctgcagtggattcgtcctttgcatgtgtggaatgccaatacagcagctgaagtggcaagtttagcagccagatca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42537956 atggttatggtatataatcctatggctgcagtggattcgtcctttgcatgtgtggaatgccaatacagcagctgaagtggcaagtctagcagccagatca 42537857  T
Q  419 acacaattaa-----------cgttttggacgtgaatgacaaacggaagagacatt 463  Q
    ||||||||||           |||||||||||||||||||||||||||||||||||    
T  42537856 acacaattaacgttcaattaacgttttggacgtgaatgacaaacggaagagacatt 42537801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 215 - 358
Target Start/End: Original strand, 22956488 - 22956630
Alignment:
Q  215 ccttgctatatagtgcgaaatatatgcgcacgactacacaagataaaaggttggtaggatttttacattttaaaaataaat--agttaaaacacagccta 312  Q
    |||||||| |||||| |||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||  |||||||||||||||||    
T  22956488 ccttgctacatagtgtgaaatatatgcgcacgactacacacgataaatggttggaaggatttttacattttaaaaataaatagagttaaaacacagccta 22956587  T
Q  313 aatccaatggttatggtatataatcctatggctgcagtggattcgt 358  Q
    ||||||||||||||| |||   ||||||||||||||||||||||||    
T  22956588 aatccaatggttatgatat---atcctatggctgcagtggattcgt 22956630  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 360 - 474
Target Start/End: Original strand, 37464850 - 37464975
Alignment:
Q  360 ctttgcatgtgtggaatgccaatacagcagctgaagtggcaagtttagcagccagatcaacacaa-----------ttaacgttttggacgtgaatgaca 448  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||           ||||||||||||||||||||||||    
T  37464850 ctttgcatgtgtggaatgccaatacagcaactgaagtggcaagtctagcagccagatcaacacaattaacgttcagttaacgttttggacgtgaatgaca 37464949  T
Q  449 aacggaagagacatttaggaagtttt 474  Q
    ||||||||||||||| ||| ||||||    
T  37464950 aacggaagagacattcagggagtttt 37464975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 212 - 358
Target Start/End: Original strand, 20761082 - 20761231
Alignment:
Q  212 cagccttgctatatagtgcgaaatatatgcgcacgacta-cacaagataaaaggttggtaggatttttacattttaaaaataaat--agttaaaacacag 308  Q
    |||||||||||||| || ||||||||||| ||||||||  ||||||||||||||||||||| ||| ||| ||||||||| |||||  | ||||| |||||    
T  20761082 cagccttgctatatggtacgaaatatatgtgcacgacttgcacaagataaaaggttggtagaattcttaaattttaaaattaaattaaattaaagcacag 20761181  T
Q  309 cctaaatccaatggttatggtatataatcctatggctgcagtggattcgt 358  Q
    ||||||||  |||||||| |||||| ||||||||||||||||| ||||||    
T  20761182 cctaaatctgatggttattgtatatgatcctatggctgcagtgaattcgt 20761231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 50558306 - 50558413
Alignment:
Q  207 attatcagccttgctatatagtgcgaaatatatgcgcacgactacacaagataaaaggttggtaggatttttacattttaaaaataaat--agttaaaac 304  Q
    |||||||||||||||||||| |||||| ||||||| ||||||  |||| |||||||||||||||||||||||||||||| |||||||||  |||||||||    
T  50558306 attatcagccttgctatataatgcgaagtatatgc-cacgacg-cacacgataaaaggttggtaggatttttacatttttaaaataaataaagttaaaac 50558403  T
Q  305 acagcctaaa 314  Q
    ||||||||||    
T  50558404 acagcctaaa 50558413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 358
Target Start/End: Original strand, 50558415 - 50558444
Alignment:
Q  329 tatataatcctatggctgcagtggattcgt 358  Q
    ||||||||||||||||||||||||||||||    
T  50558415 tatataatcctatggctgcagtggattcgt 50558444  T

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Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 24053593 - 24053511
Alignment:
Q  278 tacattttaaaaataaatag--ttaaaacacagcctaaatccaatggttatggtatataatcctatggctgcagtggattcgt 358  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24053593 tacattttaaaaataaatagagttaaaacacaacctaaatccaatggttatggtatataatcctatggctgcagaggattcgt 24053511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 215 - 357
Target Start/End: Complemental strand, 1933447 - 1933303
Alignment:
Q  215 ccttgctatatagtgcgaaatatatgcgcacgactacacaagataaaaggttggtaggatttttacattttaaaaataaatag--ttaaaacacagccta 312  Q
    |||||||||||||||| |||||||||||||||||| ||||  |||| | |  ||||| ||||||||||||| ||||||||||   |||||| | | ||||    
T  1933447 ccttgctatatagtgcaaaatatatgcgcacgactgcacacaataacacgccggtagaatttttacatttttaaaataaataaatttaaaatataaccta 1933348  T
Q  313 aatccaatggttatggtatataatcctatggctgcagtggattcg 357  Q
    ||||||||||||||  |||||||||||||| ||| ||||||||||    
T  1933347 aatccaatggttattatatataatcctatgactgtagtggattcg 1933303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 211 - 358
Target Start/End: Complemental strand, 17725169 - 17725020
Alignment:
Q  211 tcagccttgctatatagtgcgaaatatatgcgcacgac-tacacaagataaaaggttggtaggatttttacattttaaaaataaatag--ttaaaacaca 307  Q
    ||||| ||||||||| ||||||||  |||||| ||||| | |||| ||||||| | ||||||| |||||||||||| ||| ||||||   ||||||||||    
T  17725169 tcagctttgctatatggtgcgaaagttatgcgtacgacctgcacacgataaaaagctggtaggttttttacatttttaaa-taaataaaattaaaacaca 17725071  T
Q  308 gcctaaatccaatggttatggtatataatcctatggctgcagtggattcgt 358  Q
    |||||||||||| |||||| | |||| ||||||||||||||||||||||||    
T  17725070 gcctaaatccaaaggttattgcatatgatcctatggctgcagtggattcgt 17725020  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 40894743 - 40894789
Alignment:
Q  370 gtggaatgccaatacagcagctgaagtggcaagtttagcagccagat 416  Q
    |||||| |||||||||||| |||||||||||||| |||| |||||||    
T  40894743 gtggaaggccaatacagcaactgaagtggcaagtctagcggccagat 40894789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 40894809 - 40894847
Alignment:
Q  425 ttaacgttttggacgtgaatgacaaacggaagagacatt 463  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  40894809 ttaacgttttggacgtgaatgactaacggaaaagacatt 40894847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 36666325 - 36666276
Alignment:
Q  425 ttaacgttttggacgtgaatgacaaacggaagagacatttaggaagtttt 474  Q
    ||||||||||| ||||| ||||| ||||||| ||||||| ||||||||||    
T  36666325 ttaacgttttgaacgtgtatgactaacggaacagacattgaggaagtttt 36666276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 474
Target Start/End: Original strand, 36575475 - 36575524
Alignment:
Q  425 ttaacgttttggacgtgaatgacaaacggaagagacatttaggaagtttt 474  Q
    |||||||||||||| || ||||| ||||||| ||||||| ||||||||||    
T  36575475 ttaacgttttggacttgtatgactaacggaacagacattgaggaagtttt 36575524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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