View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11248_high_10 (Length: 250)

Name: NF11248_high_10
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11248_high_10
NF11248_high_10
[»] chr4 (4 HSPs)
chr4 (1-233)||(11849202-11849434)
chr4 (10-46)||(3561509-3561545)
chr4 (1-49)||(3565236-3565284)
chr4 (1-46)||(3557221-3557266)
[»] chr7 (9 HSPs)
chr7 (87-233)||(29073736-29073882)
chr7 (1-57)||(29074545-29074601)
chr7 (1-57)||(29106280-29106336)
chr7 (4-50)||(29898847-29898893)
chr7 (1-46)||(29858913-29858958)
chr7 (1-50)||(29873968-29874017)
chr7 (1-50)||(29894951-29895000)
chr7 (5-38)||(29884760-29884793)
chr7 (9-40)||(29431567-29431598)
[»] chr1 (3 HSPs)
chr1 (5-55)||(4367038-4367088)
chr1 (4-49)||(39379600-39379645)
chr1 (18-50)||(17561318-17561350)
[»] chr3 (1 HSPs)
chr3 (4-50)||(3625249-3625295)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 11849202 - 11849434
Alignment:
Q  1 ttggagatgttgtcctggtggctgggttccataaacggagccagtactctgtataattatagttgatctgctataattactggtggctaatgtaccattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  11849202 ttggagatgttgtcctggtggctgggttccataaacggagccagtactctgtataattatagttgatctgctataattattggtgactaatgtaccattt 11849301  T
Q  101 ttcattgacaccaaagaggacaagaaataaataataattcaaaatgataaaattaacgtaagttactgtcttttgtttttgttttgaggtaatacgagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11849302 ttcattgacaccaaagaggacaagaaataaataataattcaaaatgataaaattaacgtaagttactgtcttttgtttttgttttgaggtaatacgagtt 11849401  T
Q  201 actatgttctatgactaaatggatgttcacatt 233  Q
    |||||||||||||||||||||||||||||||||    
T  11849402 actatgttctatgactaaatggatgttcacatt 11849434  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 3561509 - 3561545
Alignment:
Q  10 ttgtcctggtggctgggttccataaacggagccagta 46  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3561509 ttgtcctagtggctgggttccataaacggagccagta 3561545  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 3565284 - 3565236
Alignment:
Q  1 ttggagatgttgtcctggtggctgggttccataaacggagccagtactc 49  Q
    |||||||| || |||| || |||||||||||||||||||||||||||||    
T  3565284 ttggagatattttcctagtagctgggttccataaacggagccagtactc 3565236  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3557266 - 3557221
Alignment:
Q  1 ttggagatgttgtcctggtggctgggttccataaacggagccagta 46  Q
    |||||||| || |||| |||||||||||||||||||| ||||||||    
T  3557266 ttggagatattttcctagtggctgggttccataaacgtagccagta 3557221  T

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Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 29073882 - 29073736
Alignment:
Q  87 ctaatgtaccatttttcattgacaccaaagaggacaagaaataaataataattcaaaatgataaaattaacgtaagttactgtcttttgtttttgttttg 186  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29073882 ctaatgtaccattgttcattgacaccaaagaggacaagaaataaacaataattcaaaatgataaaattaacgtaagttactatcttttgtttttgttttg 29073783  T
Q  187 aggtaatacgagttactatgttctatgactaaatggatgttcacatt 233  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||    
T  29073782 aggtaatatgagttaatatgttctatgattaaatggatgttcacatt 29073736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29074601 - 29074545
Alignment:
Q  1 ttggagatgttgtcctggtggctgggttccataaacggagccagtactctgtataat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29074601 ttggagatgttgtcctggtggctgggttccataaacggagccagtactctgtttaat 29074545  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29106336 - 29106280
Alignment:
Q  1 ttggagatgttgtcctggtggctgggttccataaacggagccagtactctgtataat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29106336 ttggagatgttgtcctggtggctgggttccataaacggagccagtactctatataat 29106280  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 29898893 - 29898847
Alignment:
Q  4 gagatgttgtcctggtggctgggttccataaacggagccagtactct 50  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||    
T  29898893 gagatgttgtcctggtggctgggttccataaacggagatagtactct 29898847  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29858958 - 29858913
Alignment:
Q  1 ttggagatgttgtcctggtggctgggttccataaacggagccagta 46  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  29858958 ttggagatgttgtccttgtggctgggttccataaacggaaccagta 29858913  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29874017 - 29873968
Alignment:
Q  1 ttggagatgttgtcctggtggctgggttccataaacggagccagtactct 50  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  29874017 ttggagatgttatcctggtggctgggttccataaacaaagccagtactct 29873968  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29895000 - 29894951
Alignment:
Q  1 ttggagatgttgtcctggtggctgggttccataaacggagccagtactct 50  Q
    ||||||||||||||||||||||||||||| ||||||| | ||||||||||    
T  29895000 ttggagatgttgtcctggtggctgggttcgataaacgaaaccagtactct 29894951  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 29884793 - 29884760
Alignment:
Q  5 agatgttgtcctggtggctgggttccataaacgg 38  Q
    ||||||||||||||||||||||||||||||||||    
T  29884793 agatgttgtcctggtggctgggttccataaacgg 29884760  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 29431567 - 29431598
Alignment:
Q  9 gttgtcctggtggctgggttccataaacggag 40  Q
    ||||||||||||||||||||||||||||||||    
T  29431567 gttgtcctggtggctgggttccataaacggag 29431598  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 4367038 - 4367088
Alignment:
Q  5 agatgttgtcctggtggctgggttccataaacggagccagtactctgtata 55  Q
    ||||||||||||||| ||||||||||||||||| | |||||||||| ||||    
T  4367038 agatgttgtcctggttgctgggttccataaacgaaaccagtactctctata 4367088  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 39379600 - 39379645
Alignment:
Q  4 gagatgttgtcctggtggctgggttccataaacggagccagtactc 49  Q
    |||||||| |||| |||||||||||||||||||||| |||||||||    
T  39379600 gagatgttttcctagtggctgggttccataaacggaaccagtactc 39379645  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 17561318 - 17561350
Alignment:
Q  18 gtggctgggttccataaacggagccagtactct 50  Q
    |||||||||||||||||||||||||||||||||    
T  17561318 gtggctgggttccataaacggagccagtactct 17561350  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 3625295 - 3625249
Alignment:
Q  4 gagatgttgtcctggtggctgggttccataaacggagccagtactct 50  Q
    ||||||| || || ||||||||||||||||| |||||||||||||||    
T  3625295 gagatgtcgttctcgtggctgggttccataagcggagccagtactct 3625249  T

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