View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11248_high_13 (Length: 239)
Name: NF11248_high_13
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11248_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9363432 - 9363658
Alignment:
| Q |
1 |
ccatattctactctggctttgagatctttgtggcacttcagtaggcctttcttccaccataggtcatccccattcacgat-----tccaccgggaatgga |
95 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9363432 |
ccatattctattctggctttgagatctttgtggcacttcagtaggcctttcttccaccataggtcatccccattcacgattcgattccaccgggaatgga |
9363531 |
T |
|
| Q |
96 |
tcccctcatgcgagatttttacatgagagaagtgtggtgtcacaccactcaagaagagagatacaaatggatggagctacattccttatcaattcaactc |
195 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9363532 |
tcccctcatgtgagatttttacatgagagaagtgtggtgtcacaccactcaagaagagagatacaaatggatggagctacattccttatcaattcaactc |
9363631 |
T |
|
| Q |
196 |
ttcctgctaaccaaggtgactcattcc |
222 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
9363632 |
ttcccgctaaccaaggtgactcattcc |
9363658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 29462507 - 29462287
Alignment:
| Q |
3 |
atattctactctggctttgagatctttgtggcacttcagtaggcctttcttccaccataggtcatccccattcacgattccaccgggaatggatcccctc |
102 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
29462507 |
atattctattctggctctgagatctttgtcacacttttgtaggcctttctttcaccataggtcatccccattcataattccaccggaaacggatcccctc |
29462408 |
T |
|
| Q |
103 |
atgcgagatttttacatgagaga--agtgtggtgtcacaccactcaagaagagagatacaaatggatggagctacattccttatcaattcaactcttcct |
200 |
Q |
| |
|
||| |||||||||||| |||||| ||| || ||||| |||| | |||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
29462407 |
atgtgagatttttacacgagagagaagt-tgatgtcataccatttcagaagagagatacaaatgtgtggagctacattccttatcaattcaatccttccc |
29462309 |
T |
|
| Q |
201 |
gctaaccaaggtgactcattcc |
222 |
Q |
| |
|
| || |||||||||| ||||| |
|
|
| T |
29462308 |
acaaaacaaggtgactaattcc |
29462287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 29449647 - 29449472
Alignment:
| Q |
20 |
tgagatctttgtggcacttcagtaggccttt-cttccaccataggtcatccccattcacgattccaccgggaatggatcccctcatgcgagatttttaca |
118 |
Q |
| |
|
|||||||||||| |||||| | ||||||| ||| ||||| ||||||||||||||||| ||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
29449647 |
tgagatctttgtcacacttctattggccttttctttcaccaaaggtcatccccattcacaattccacggggaatggatcccctcgtgtgagatttttaca |
29449548 |
T |
|
| Q |
119 |
t--gagagaagtgtggtgtcacaccactcaagaagagagatacaaatggatggagctacattccttatcaattcaa |
192 |
Q |
| |
|
|||||||||||| |||||||||| || ||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29449547 |
caagagagaagtgtgatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaa |
29449472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University