View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11248_high_3 (Length: 541)
Name: NF11248_high_3
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11248_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 42535194 - 42535712
Alignment:
| Q |
1 |
gcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaatgccaaggtcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535194 |
gcattgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaatgccaaggtcct |
42535293 |
T |
|
| Q |
101 |
aacctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgattggatcaacatc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535294 |
aacctactctgcgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgattggatcaacatc |
42535393 |
T |
|
| Q |
201 |
acttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctcaaacaattcaatt |
300 |
Q |
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| T |
42535394 |
agttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctcaaacaattcaatt |
42535493 |
T |
|
| Q |
301 |
gtctacattggaatagggaggtagacatgattgtgtgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttgacttaccaagttt |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42535494 |
gtctacattagaatagggaggtagacatgattgtgtgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttgacttaccaagttt |
42535593 |
T |
|
| Q |
401 |
taagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctcaaaaaccaaaca |
500 |
Q |
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| T |
42535594 |
taagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctcaaaaaccaaaca |
42535693 |
T |
|
| Q |
501 |
aattttgtatggaactttc |
519 |
Q |
| |
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||||||||||||||||||| |
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| T |
42535694 |
aattttgtatggaactttc |
42535712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 3 - 523
Target Start/End: Original strand, 42529474 - 42529997
Alignment:
| Q |
3 |
attgaagacataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttttgttgtgaaatttgatgatgttaatgccaaggtcctaa |
102 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| ||| |
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| T |
42529474 |
attgaatacacaaggagggccaagccggatgccggttttgatctttttcagtcagattcttttgttgtaaaatttgatgatgttaatgtcaaggtcttaa |
42529573 |
T |
|
| Q |
103 |
cctactctccgcaagatagtatattcaaggtttttgatcttaaaaactacacttttctatacttgttttcatttagcaatgttgattggatcaacatcac |
202 |
Q |
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| T |
42529574 |
cctactctgcgcaagatagtatgttcaaggtttttgaccttaaaaactacacttttctatactcgttttcatttagcaatgttcaacggatcaacatcag |
42529673 |
T |
|
| Q |
203 |
ttctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctcaaacaattcaattgt |
302 |
Q |
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||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||| || | |
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| T |
42529674 |
ttctggcatcatgttattcatcttccaaagaagaagtgatcatattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagttat |
42529773 |
T |
|
| Q |
303 |
ctacattggaatagggaggtagacatgattgtg---tgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttgacttaccaagtt |
399 |
Q |
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||||||||||||| |||||||||| | || ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42529774 |
ctacattggaataaggaggtagacttcatagtgcaatgcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagtt |
42529873 |
T |
|
| Q |
400 |
ttaagattatggcatcggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctcaaaaaccaaac |
499 |
Q |
| |
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|||| | | | | ||||||||||||||||||||||| ||| | | ||||||| |||| | ||||||| |||||||||||||||||| ||||| ||| |
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| T |
42529874 |
ctaagctgacgccggtagtaagcagaactgagttcatgaaaccaactatatttatccttctttacaagaaagagttattccttactctcataaaccgaac |
42529973 |
T |
|
| Q |
500 |
aaattttgtatggaactttcgtgg |
523 |
Q |
| |
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|| || |||||||||||||||||| |
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| T |
42529974 |
aatttctgtatggaactttcgtgg |
42529997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 388
Target Start/End: Original strand, 27824597 - 27824786
Alignment:
| Q |
205 |
ctggcatcatgttattcatcttcaaaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctcaaacaattcaattgtct |
304 |
Q |
| |
|
|||||||||||||||| || ||||| ||| |||||| ||||||||| | || |||||||||||||||||||||| |||||||||| ||||||| ||| |
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| T |
27824597 |
ctggcatcatgttattaatattcaatagagcaagtggtcatattccactgaaaattatatccattgaggatggcacagttctcaaagcattcaatcatct |
27824696 |
T |
|
| Q |
305 |
a---cattggaatagggaggtagacatgattgtg---tgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttga |
388 |
Q |
| |
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| ||| |||||| | |||| ||| | || | | | |||||||||||||||||||| |||||| |||| |||||||| |||||||| |
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| T |
27824697 |
actccatcggaataagaaggtggacttcatagagcaattcaatgaaaagcttctagtcaagcaggaaaatgagaaccttcaaattcttga |
27824786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 27822153 - 27822207
Alignment:
| Q |
67 |
ttgtgaaatttgatgatgttaatgccaaggtcctaacctactctccgcaagatag |
121 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||| |||||| |||| ||||| |
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| T |
27822153 |
ttgtggaatttgatgatgttaatgcaaaggtcctaacatactctgcgcaggatag |
27822207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 523
Target Start/End: Original strand, 27825625 - 27825732
Alignment:
| Q |
416 |
ggtaagcagaactgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctcaaaaaccaaacaaattttgtatggaac |
515 |
Q |
| |
|
|||||||||||| |||||||||| || ||| |||||||||||| | | | || ||||||||||||||| ||| ||| | |||| || ||| |||||| |
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| T |
27825625 |
ggtaagcagaaccgagttcatgactccttcagcatttatctttctgtacgaaaatcagttattccttactttcagaaatcgaacagtttctgtctggaac |
27825724 |
T |
|
| Q |
516 |
tttcgtgg |
523 |
Q |
| |
|
|||||||| |
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|
| T |
27825725 |
tttcgtgg |
27825732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 27822084 - 27822138
Alignment:
| Q |
10 |
acataaggagggccaagccggatgccggttttgatctttttcagtcagagtcttt |
64 |
Q |
| |
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|||||| |||||||||||||||||| |||||| |||||| ||||| |||||||| |
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|
| T |
27822084 |
acataaagagggccaagccggatgctggttttcctcttttccagtccgagtcttt |
27822138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 27822302 - 27822347
Alignment:
| Q |
120 |
agtatattcaaggtttttgatcttaaaaactacacttttctatact |
165 |
Q |
| |
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||||||| |||||| || |||||||||||||||||||| ||||||| |
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| T |
27822302 |
agtatatacaaggtcttcgatcttaaaaactacactttgctatact |
27822347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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