View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11248_high_5 (Length: 396)
Name: NF11248_high_5
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11248_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Original strand, 33886162 - 33886531
Alignment:
| Q |
16 |
gttcaaccattgcagttaggtagttttcatctggttgcacactctatgggcagtgtaattgcattggctttggctgcaaagtatcccaattgtgtaaaat |
115 |
Q |
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| T |
33886162 |
gttcaaccattgcagttaggtagttttcatctggttgcacactctatgggcagtgtaattgcattggctttggctgcaaagtatcccaattgtgtaaaat |
33886261 |
T |
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| Q |
116 |
caatcacccttgttgcacctgtaagtaccttagactcaaactagatattgcattcaagttttaacaattggaatggtatgagccatattggaaacttttg |
215 |
Q |
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| T |
33886262 |
caatcacccttgttgcacctgtaagtaccttagactcaaattagatattgcattcaagttttaacaattggaatggtatgagccatattggaaacttttg |
33886361 |
T |
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| Q |
216 |
tgctacatatttctttggcacttgctttctgcagtcaaaataagtgttttattatttttgctgataatttgtctatcgtaattctcttgtaaatttgatt |
315 |
Q |
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| T |
33886362 |
tgctacatatttctttggcacttgctttctgcagtcaaaataagtgttttattatttttgctgataatttgtctatcgtgattctcttgtaaatttgatt |
33886461 |
T |
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| Q |
316 |
ttgaagtgaagtaatttatgttcggatgtttttactcgaccataggtttgatgggaaacacagtgttcat |
385 |
Q |
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| T |
33886462 |
ttgaagtgaagtaatttatgttcggatgtttttactcgaccataggtttgatgggaaacgcagtgttcat |
33886531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 45755994 - 45756035
Alignment:
| Q |
305 |
taaatttgattttgaagtgaagtaatttatgttcggatgttt |
346 |
Q |
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| T |
45755994 |
taaaattgaatttgaagtgaagtaatttatgtttggatgttt |
45756035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 48360919 - 48360963
Alignment:
| Q |
302 |
ttgtaaatttgattttgaagtgaagtaatttatgttcggatgttt |
346 |
Q |
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| T |
48360919 |
ttgtaaaattgagtttgaagtgaagtaatttatgtttcgatgttt |
48360963 |
T |
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