View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11248_low_1 (Length: 675)
Name: NF11248_low_1
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11248_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 659
Target Start/End: Original strand, 7969691 - 7970356
Alignment:
| Q |
18 |
aaaagaagttcatgatcaaaatcaataagagaaattttgagacaaatatttcaagaactgatacaaaaa-tagagaacactagcaaccnnnnnnnggcat |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
7969691 |
aaaagaagttcatgatcagaatcaataaaagaaattttgagacaaatatttcaagaactgatacaaaaaatagagaacactagcaacctttttttggcat |
7969790 |
T |
|
| Q |
117 |
ttgcaaaactgatgaatttgagataaataaaatgctagtgtataaatccaaaacattcaagatattaataagacttcaattggacaaaaaaccaaagcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7969791 |
ttgcaaaactgatgaatttgagataaataaaatgctagtgtataaattcaaaacattaaagataataataagacttcaattggacaaaaaaccaaagcaa |
7969890 |
T |
|
| Q |
217 |
agaaaaggagatagggcataccatgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagtt |
316 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7969891 |
agaaaaggagatagggcataccgtgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagtt |
7969990 |
T |
|
| Q |
317 |
gctaaagtaaactgttggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggacccagaag |
416 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7969991 |
gctaaagtaaactgttggacgttcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccgatatatcataactatactcggacccagaag |
7970090 |
T |
|
| Q |
417 |
agttaggaccaatgcagcaaatattgactgcatttcccaaactcatagtattgttattta----------------------ttcctcttgaagaacaat |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7970091 |
agttaggaccaatgcagcaaatattgactgcttttcccaaactcatagtattgttatttagaataaatagttttccgtcattttcctcttgaagaacaat |
7970190 |
T |
|
| Q |
495 |
ggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctgaaatggttggacaacact |
594 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7970191 |
ggtttcaccattagacatcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctgaaatggttggacaacact |
7970290 |
T |
|
| Q |
595 |
tctgacgacgcaacaaagtcacaacctgaaagggg-caggaacatggctcatagatacattcttct |
659 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||| |
|
|
| T |
7970291 |
tctgatgacgcaacaaagtcacaacctgaaaggggacagtaacatggtacatagatgcattcttct |
7970356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 112 - 466
Target Start/End: Complemental strand, 37577316 - 37576971
Alignment:
| Q |
112 |
ggcatttgcaaaactgatgaatttgagataaataaaatgctagtgtataaatccaaaacattcaagatattaataagacttcaattggacaaaaaaccaa |
211 |
Q |
| |
|
|||||||| |||||||||||||||||||| || ||||||| |||||||| ||||||| |||| | |||||||| || || ||| ||||||| | |
|
|
| T |
37577316 |
ggcatttgaaaaactgatgaatttgagattaa----atgctagagtataaattcaaaacaa--aagaaaataataagattttgatagga-aaaaaac--a |
37577226 |
T |
|
| Q |
212 |
agcaaagaaaaggagatagggcataccatgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaa |
311 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
37577225 |
agcaaagaaaaggatataggaggtaccatgggggatatgcaaatttctagctcgagaggttcagaagaaccaaatggaatcacaaggaactctaatgaaa |
37577126 |
T |
|
| Q |
312 |
gagttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggaccc |
411 |
Q |
| |
|
|||||| |||||||||| |||| || |||||||||| ||||| |||||| |||||||| | ||| |||||||||||||||||| | ||||| || |
|
|
| T |
37577125 |
gagttgataaagtaaaccgttgcacattcttcgcaaacgactgaaatttcggtttgcatgcttgagatctagccaatatatcataaccacactcgtactg |
37577026 |
T |
|
| Q |
412 |
agaagagttaggaccaatgcagcaaatattgactgcatttcccaaactcatagta |
466 |
Q |
| |
|
|||||| || |||| |||||| |||||||||| ||||||||| ||| ||||||| |
|
|
| T |
37577025 |
agaagactttggactaatgcaacaaatattgattgcatttccaaaaagcatagta |
37576971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 480 - 659
Target Start/End: Complemental strand, 37576935 - 37576755
Alignment:
| Q |
480 |
ctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctgaaa |
579 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| | ||| ||||||||||||| | | | ||||||||||| ||||||||||||||| |
|
|
| T |
37576935 |
ctcttgaagaacaatagtttcatcattagacttcaaggagacaataacggacagaccataagaaaacttggtctgagaatccccgtgtttatggctgaaa |
37576836 |
T |
|
| Q |
580 |
tggttggacaacacttctgacgacgcaacaaagtcacaacctgaaag-gggcaggaacatggctcatagatacattcttct |
659 |
Q |
| |
|
|| || |||||||||||||| || ||||||||||||||| ||| || |||||| |||| ||||||| ||| |||| |||| |
|
|
| T |
37576835 |
tgcttagacaacacttctgatgatgcaacaaagtcacaatctggcagagggcagtaacacggctcatggatgcattgttct |
37576755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 361
Target Start/End: Complemental strand, 37586742 - 37586681
Alignment:
| Q |
300 |
actctgatgaaagagttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttc |
361 |
Q |
| |
|
||||| |||||||||||| |||||||||| |||||| ||||| |||| |||||||||||| |
|
|
| T |
37586742 |
actctcatgaaagagttgttaaagtaaaccgttggatattcttcacaaacgactgtaatttc |
37586681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 36 - 457
Target Start/End: Complemental strand, 17591686 - 17591268
Alignment:
| Q |
36 |
aaatcaataagagaaattttgagacaaatatttcaagaactgatacaaaaatagagaacactagcaaccnnnnnnnggcatttgcaaaactgatgaattt |
135 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||||||||| |||||||||| ||||||| || || |||||||| |||||||| |||| |
|
|
| T |
17591686 |
aaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaacactaacagcctttgtttggcatttgaaaaactgaagaataa |
17591587 |
T |
|
| Q |
136 |
gagataaataaaatgctagtgtata--aatccaaaacattcaagatattaataagacttcaattggac-aaaaaaccaaagcaaagaaaaggagataggg |
232 |
Q |
| |
|
|| ||||||||||| ||||| ||| ||| |||| |||| | ||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17591586 |
ga------taaaatgctagagtatataaattcaatacataaaagaaaataataagactttaattggaggaaaaaaccaaagcaaagaaaaggagatagga |
17591493 |
T |
|
| Q |
233 |
cataccatgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgtt |
332 |
Q |
| |
|
|||| || ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
17591492 |
ggtaccgtgcgggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaactctgatgaaagagttgctaaagtaacttgtt |
17591393 |
T |
|
| Q |
333 |
ggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggacccagaagagttaggaccaatgca |
432 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||| |||| | |||| |||||||||||||||||||||| |
|
|
| T |
17591392 |
ggacgttcttcgcaaaagactgtaatttcagtatgcaattctgagacctagccaatatatcataattatagttggactcagaagagttaggaccaatgca |
17591293 |
T |
|
| Q |
433 |
gcaaatattgactgcatttcccaaa |
457 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
17591292 |
gcaaagattgactgcatttcccaaa |
17591268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 203 - 457
Target Start/End: Complemental strand, 17583615 - 17583361
Alignment:
| Q |
203 |
aaaaaccaaagcaaagaaaaggagatagggcataccatgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaact |
302 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
17583615 |
aaaaaccaaagcattgaaaaggaaataggaggtaccctgggggttatgcaaatatctagcttgagaggttcagaagaaccaaatggaatcacaagcaact |
17583516 |
T |
|
| Q |
303 |
ctgatgaaagagttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactata |
402 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| ||||| | ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |
|
|
| T |
17583515 |
ctgatgaaagagttgctaaaggaacctgttggacgttcttcacgaaagactgtaatttcagtttggatatctgagacctagccaatatatcataactata |
17583416 |
T |
|
| Q |
403 |
ctcggacccagaagagttaggaccaatgcagcaaatattgactgcatttcccaaa |
457 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17583415 |
gtcggactcagaagagttaggaccaatgcagcaaagattgactgcatttcccaaa |
17583361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 477 - 629
Target Start/End: Complemental strand, 17583319 - 17583167
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
17583319 |
ttcctcttgaagaacaatggtttcatcattagacttcatggagacagtgaaggactgaccataagaaaatttgatttgagaatcaccatgtttatggctg |
17583220 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaagggg |
629 |
Q |
| |
|
|| ||||||||||||| ||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
17583219 |
aagtggttggacaacaattctgacgatgcagcaaagtcacatcctgaaagggg |
17583167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 477 - 629
Target Start/End: Complemental strand, 17591226 - 17591074
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||| |||||||||||||||||| ||| |
|
|
| T |
17591226 |
ttcctcttgaagaacaataatttcatcattagacttcaaggagacagtgaaggagtaaccataagaaaatttgattatagaatccccatgtttatgcctg |
17591127 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaagggg |
629 |
Q |
| |
|
||||||||||||||||||||||| || ||| |||||||||| ||||||||||| |
|
|
| T |
17591126 |
aaatggttggacaacacttctgatgatgcagcaaagtcacatcctgaaagggg |
17591074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 7e-91; HSPs: 24)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 63 - 453
Target Start/End: Complemental strand, 32763248 - 32762865
Alignment:
| Q |
63 |
atatttcaagaactgatacaaaaatagagaacactagcaaccnnnnnnnggcatttgcaaaactgatgaatttgagataaataaaatgctagtgtataaa |
162 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||| ||||| | ||| || ||||||||||||||| |||||| ||| ||||||| |
|
|
| T |
32763248 |
atatttcaagaactgatccaaaaatagaaaacactaacaaccttagttttgacattgaaacactgatgaatttgag----ataaaacacta--gtataaa |
32763155 |
T |
|
| Q |
163 |
tccaaaacattcaagatattaataagacttcaattggacaaaaaaccaaagcaaagaaaaggagatagggcataccatgggggttatgcaaatgtctagc |
262 |
Q |
| |
|
| ||||||| | |||| | ||| ||||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
32763154 |
ttcaaaaca-taaagaaaataacaagactttaattggggaaaaaacaaaagcaaagaaaaggagataggaggtaccatgggggttatgcaaatatctagc |
32763056 |
T |
|
| Q |
263 |
ttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttca |
362 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||| |
|
|
| T |
32763055 |
ttgagaggttcggaagaagcaaatggaatcacaagaaactctgatgaaagagttgctaaagcaacacgttggacgttcttcacaaaagactgtaatttca |
32762956 |
T |
|
| Q |
363 |
gtttgcatatctcagacttagccaatatatcataactatactcggacccagaagagttaggaccaatgcagcaaatattgactgcatttcc |
453 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
32762955 |
gtttgcatatctgagagctagccaatatatcataactatactcagactcagaagagttaggaccgaggcagcaaatattgactgcatttcc |
32762865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 210 - 457
Target Start/End: Complemental strand, 28474968 - 28474721
Alignment:
| Q |
210 |
aaagcaaagaaaaggagatagggcataccatgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatga |
309 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
28474968 |
aaagcaaagaaaaggagataggaggtaccatgggggttatacaaatatctagcttgagaggttcggaagaaccaaatggaatcacaagcaactctgatga |
28474869 |
T |
|
| Q |
310 |
aagagttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggac |
409 |
Q |
| |
|
| |||||||||||| || || ||||||| ||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
28474868 |
aggagttgctaaagcaacctcttggacgttcttcacaaaagactgtaaagtcagtttgcatatctgagacctagccaatatatcataactatactcggac |
28474769 |
T |
|
| Q |
410 |
ccagaagagttaggaccaatgcagcaaatattgactgcatttcccaaa |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28474768 |
tcagaagagttaggaccaatgcagcaaatattgactccatttcccaaa |
28474721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 247 - 453
Target Start/End: Complemental strand, 32767971 - 32767765
Alignment:
| Q |
247 |
tatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgctcttcgca |
346 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| | || |||||||||||||| |||||||| ||||||||||||||||||||| ||||| | ||| || |
|
|
| T |
32767971 |
tatgcaaatttctagcttgagtggttcagaagagccaactggaatcacaaggagctctgatggaagagttgctaaagtaaactgctggacatttttcaca |
32767872 |
T |
|
| Q |
347 |
aaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggacccagaagagttaggaccaatgcagcaaatattgactg |
446 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
32767871 |
aaagactgtaatttcagtttgcatgtctgagacctagccaatatatcataactatactcggactcagaggagttaggaccaatgcagcaaatatagactg |
32767772 |
T |
|
| Q |
447 |
catttcc |
453 |
Q |
| |
|
||||||| |
|
|
| T |
32767771 |
catttcc |
32767765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 204 - 466
Target Start/End: Complemental strand, 32858366 - 32858101
Alignment:
| Q |
204 |
aaaaccaaagcaaagaaaaggagatagggcataccatgggggttatgcaaatgtctagcttgagaggt---tcagaagaacgaaatggaatcacaaggaa |
300 |
Q |
| |
|
|||| ||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||| ||| |||||| |||||||||||||||| | |
|
|
| T |
32858366 |
aaaagcaaagaaaagaaaaggagataggaggtaccatgggggctatgcaaatatctagcttatgaggtggttcaaaagaaccaaatggaatcacaaggca |
32858267 |
T |
|
| Q |
301 |
ctctgatgaaagagttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataacta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||| |||| ||||| |||||||| ||||| |
|
|
| T |
32858266 |
ctctgatgaaagagttgctaaagtaaaccgttggacgtatttcacaaaagactgtaatttcaatttgcatatctgagacctagccgatatatcagaacta |
32858167 |
T |
|
| Q |
401 |
tactcggacccagaagagttaggaccaatgcagcaaatattgactgcatttcccaaactcatagta |
466 |
Q |
| |
|
|||| ||| || ||||||||||||||||||| |||||||| ||||||||||| ||||||| |||| |
|
|
| T |
32858166 |
tacttggattcacaagagttaggaccaatgcaacaaatattaactgcatttcctaaactcagagta |
32858101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 245 - 453
Target Start/End: Complemental strand, 32740163 - 32739955
Alignment:
| Q |
245 |
gttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgctcttcg |
344 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||| ||||||||| |||| | |
|
|
| T |
32740163 |
gttatgcaaatttctaacttgagaggttcagaagaactaaatggaatcacaaggaactttgatgaaagatttgctaaagtaatctgttggacattcttgg |
32740064 |
T |
|
| Q |
345 |
caaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggacccagaagagttaggaccaatgcagcaaatattgac |
444 |
Q |
| |
|
||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||||||||||| ||| |||||| || ||||||| ||||||||||||||| |
|
|
| T |
32740063 |
caaaagagtgtaatttcagtttacatatctgagacgtagccaatatatcgtaactatactcagactcagaagcgtctggaccaaagcagcaaatattgac |
32739964 |
T |
|
| Q |
445 |
tgcatttcc |
453 |
Q |
| |
|
|||||||| |
|
|
| T |
32739963 |
agcatttcc |
32739955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 477 - 640
Target Start/End: Complemental strand, 28474679 - 28474515
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
28474679 |
ttcctcttgaagaacaatggtttcatcattagacttcaaagagacattgaaggagtgaccataagaaaatttgattcgagaatccccatgtttatggctg |
28474580 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaag-gggcaggaacatgg |
640 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
28474579 |
aaatggttggacaacacttctgatgatgcagcaaagtcacaaccagaaagagggcagtaacatgg |
28474515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 247 - 455
Target Start/End: Original strand, 32651840 - 32652048
Alignment:
| Q |
247 |
tatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgctcttcgca |
346 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| |||||| ||| || |
|
|
| T |
32651840 |
tatgcaaatttctagcttcagaggttcagaagaaccaaatggaatcacaaggaactctgatgaaagatttgctgaagtaacacgttggaaatccttacca |
32651939 |
T |
|
| Q |
347 |
aaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggacccagaagagttaggaccaatgcagcaaatattgactg |
446 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||| | || |||| |||||||||| |||||||||||||| |
|
|
| T |
32651940 |
aaagactgtaatttcagtttgcacatctcagacctagccaatatatcataactatattcagactcgtaaaagtttggaccaatgccgcaaatattgactg |
32652039 |
T |
|
| Q |
447 |
catttccca |
455 |
Q |
| |
|
||||||||| |
|
|
| T |
32652040 |
catttccca |
32652048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 480 - 657
Target Start/End: Complemental strand, 25469391 - 25469213
Alignment:
| Q |
480 |
ctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctgaaa |
579 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| ||| |
|
|
| T |
25469391 |
ctcttgaagaacaacggtttcatcattagaattcaaggagacaatgaaggagtgatcataagaaaatttattttgagaatccccgtgtttttggctaaaa |
25469292 |
T |
|
| Q |
580 |
tggttggacaacacttctgacgacgcaacaaagtcacaacctg-aaaggggcaggaacatggctcatagatacattctt |
657 |
Q |
| |
|
||| |||||| ||||||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
25469291 |
tggctggacagcacttctgatgatgcaacgaagtcacaacctgaaaaggggcagtaacatggctcatagatacattctt |
25469213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 476 - 659
Target Start/End: Complemental strand, 32710009 - 32709825
Alignment:
| Q |
476 |
attcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggct |
575 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||| |
|
|
| T |
32710009 |
attcctcttgaagaacaatggcttcgtcattaaactttaaggagacaatgaaggagtgaccataagaaaatgtgctttgaaaatccttgtgtttatggct |
32709910 |
T |
|
| Q |
576 |
gaaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaagggg-caggaacatggctcatagatacattcttct |
659 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||| |
|
|
| T |
32709909 |
gaaatgattggacaacacttctgatgaggcaacaaagtcacaacctgaaaggggacagtaacatggcacatacatacattcttct |
32709825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 477 - 629
Target Start/End: Complemental strand, 32762819 - 32762667
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
32762819 |
ttcctcttgaaggacaatggtttcatcattagacttcaaggagacaatgaaggagccaccataagaaaatttgatgtgagaatccctgtgtttatggctg |
32762720 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaagggg |
629 |
Q |
| |
|
| ||||||||||||||||||||| || ||| |||||||||||||||||||||| |
|
|
| T |
32762719 |
acatggttggacaacacttctgatgatgcagcaaagtcacaacctgaaagggg |
32762667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 477 - 659
Target Start/End: Original strand, 32662234 - 32662417
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||| | | ||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||| |||| |
|
|
| T |
32662234 |
ttcctcttgaaaaacaatggtttcatcattagacttgatgtagacaattaaggagtgaccataagaaaatttgatatgagaatccccgtgtttatcgctg |
32662333 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaa-ggggcaggaacatggctcatagatacattcttct |
659 |
Q |
| |
|
||||| || |||||||||||||| || |||||||||||||| | ||||| |||||| |||||||| ||| ||| ||||||||| |
|
|
| T |
32662334 |
aaatgcttagacaacacttctgatgatgcaacaaagtcacagcttgaaacagggcagcaacatggcacatggatgcattcttct |
32662417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 477 - 659
Target Start/End: Original strand, 32558147 - 32558330
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
|||||||||||||||| | |||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||| || |
|
|
| T |
32558147 |
ttcctcttgaagaacagcagcttcatcattagaattcaacgagacagtgaaggagtgaccataagaaaattcgattagagagtccccgtgtttatggttg |
32558246 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacc-tgaaaggggcaggaacatggctcatagatacattcttct |
659 |
Q |
| |
|
||||||||||||||||||||| | || |||||||| |||||||| | || ||| ||| |||||||| ||||||| ||||||||| |
|
|
| T |
32558247 |
aaatggttggacaacacttctaatgaggcaacaaaatcacaacctttaacgggacagtaacatggcacatagatgcattcttct |
32558330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 477 - 655
Target Start/End: Complemental strand, 32739909 - 32739730
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||| || |||||| ||||||| |||||||| |||||| ||||||||||||||||||| | |
|
|
| T |
32739909 |
ttcctctcgaagaacaatggtttcatcattagacttcaaggagataacgaaggattgaccattagaaaatttgatttgcgaatccccatgtttatggcag |
32739810 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctg-aaaggggcaggaacatggctcatagatacattc |
655 |
Q |
| |
|
||||| | |||||||||||||| || ||||||||||||| |||| |||||| ||| ||||||||| || ||| ||||| |
|
|
| T |
32739809 |
aaatgcatagacaacacttctgatgattcaacaaagtcacatcctgaaaagggacagtaacatggcttatggatgcattc |
32739730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 245 - 457
Target Start/End: Original strand, 32656093 - 32656305
Alignment:
| Q |
245 |
gttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgctcttcg |
344 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||| ||||||||||||||| ||||| || |||||||||||||| || | |||||| |||||| |
|
|
| T |
32656093 |
gttatgcaaatttctagcttgagagcttcaaaagaaccaaatggaatcacaagcaactccgacgaaagagttgctaatacaaccgattggacattcttcg |
32656192 |
T |
|
| Q |
345 |
caaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggacccagaagagttaggaccaatgcagcaaatattgac |
444 |
Q |
| |
|
| |||||||||||||||| ||||| |||| |||| || |||||||||| |||||| | || ||| | ||||||| |||||||| ||||||||||||| |
|
|
| T |
32656193 |
cgaaagactgtaatttcaagttgcacatctgagacctaaccaatatatcgtaactacattcagactcgaaagagtttggaccaatacagcaaatattgat |
32656292 |
T |
|
| Q |
445 |
tgcatttcccaaa |
457 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32656293 |
agcatttcccaaa |
32656305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 477 - 625
Target Start/End: Original strand, 32656347 - 32656495
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
32656347 |
ttcctcttgaaaaacaatggtttcatccttagacttcaaggagacattgaaggagtcaccataagaaaatttgatttgagaatccttgtgtttatcgctg |
32656446 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaa |
625 |
Q |
| |
|
||||| || ||||||||||| || || ||||||||| |||||| ||||| |
|
|
| T |
32656447 |
aaatgcttagacaacacttcggatgatgcaacaaagccacaacttgaaa |
32656495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 477 - 647
Target Start/End: Complemental strand, 32858068 - 32857909
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| |||| |
|
|
| T |
32858068 |
ttccttttgaagaacaatggtttcaactttagacttcaaggagacaatgaaggagtgaccatacgaaaattggatttgagaatccctgtgtttaaagctg |
32857969 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaa-ggggcaggaacatggctcatag |
647 |
Q |
| |
|
|||||||| ||| || |||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
32857968 |
aaatggtt------------tgatgatgcaacaaagtcacaacctgaaagggggcagtaacatggctcatag |
32857909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 479 - 657
Target Start/End: Original strand, 32652094 - 32652273
Alignment:
| Q |
479 |
cctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctgaa |
578 |
Q |
| |
|
||||||||| ||||||||||| | | |||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
32652094 |
cctcttgaaaaacaatggtttgatcgttagacttcaaggagacaatgaaggaatgaccataaaaaaatttgatttgagtatccctttgtttattgctgaa |
32652193 |
T |
|
| Q |
579 |
atggttggacaacacttctgacgacgcaacaaagtcacaacct-gaaaggggcaggaacatggctcatagatacattctt |
657 |
Q |
| |
|
||| || ||| ||||||||| || |||||||||| ||||| | ||| |||||| |||||||| ||| ||| ||||||| |
|
|
| T |
32652194 |
atgcttatacagcacttctgatgatgcaacaaagtgacaacttggaacagggcagtaacatggcgcatggatgcattctt |
32652273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 248 - 466
Target Start/End: Complemental strand, 25469645 - 25469427
Alignment:
| Q |
248 |
atgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgctcttcgcaa |
347 |
Q |
| |
|
|||||||| |||| || ||||||||||||| ||| |||||||||||||||||||| ||||||||||||| ||||||| | ||||||| ||||||||| |
|
|
| T |
25469645 |
atgcaaatttctatctcgagaggttcagaaaaaccaaatggaatcacaaggaactttgatgaaagagttttcaaagtaacccgttggacattcttcgcaa |
25469546 |
T |
|
| Q |
348 |
aagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggacccagaagagttaggaccaatgcagcaaatattgactgc |
447 |
Q |
| |
|
||| || |||||||| | | |||| ||| ||| || |||| ||||||||||| |||| ||||||| || |||||||||||||||| |||||| || |
|
|
| T |
25469545 |
aagtgtgaaatttcagctcactcatcttagaacaagctaaaatattataactatacttggactcagaagattttggaccaatgcagcaaacattgaccgc |
25469446 |
T |
|
| Q |
448 |
atttcccaaactcatagta |
466 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
25469445 |
gtttcccaaaaacatagta |
25469427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 477 - 638
Target Start/End: Complemental strand, 32767719 - 32767557
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
|||||| ||||||||||||| || | |||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||||| |
|
|
| T |
32767719 |
ttcctcctgaagaacaatggcttgatcattggactttaaggagacaatgaaggagtgaccataattaaatttgatttgagaattccggtgttttcggctg |
32767620 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaa-ggggcaggaacat |
638 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||| |||||||| ||| ||||||| ||||| |
|
|
| T |
32767619 |
aaatggttggacaacacttctgatgttgcagcaaagccacaacctaaaatggggcagtaacat |
32767557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 274 - 457
Target Start/End: Original strand, 32662009 - 32662192
Alignment:
| Q |
274 |
agaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttcagtttgcatatc |
373 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| ||| ||||||| || | || |||| || ||| ||||||||||| |||||||||||||| ||| |
|
|
| T |
32662009 |
agaagaaccaaatggaatcaaaaggaactctgaggaaggagttgcgaacgcaacacgttgaacatcctttgcaaaagactgcaatttcagtttgcacatc |
32662108 |
T |
|
| Q |
374 |
tcagacttagccaatatatcataactatactcggacccagaagagttaggaccaatgcagcaaatattgactgcatttcccaaa |
457 |
Q |
| |
|
| |||| |||||||||||| ||| ||||| || ||| | ||||||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
32662109 |
tgagacctagccaatatataatatctatattcagactcgaaagagtttggaccaatacagcaaatattgatagcatttcccaaa |
32662192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 222 - 461
Target Start/End: Complemental strand, 32710294 - 32710046
Alignment:
| Q |
222 |
aggagatagggcataccatgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaa---------tggaatcacaaggaactctgatgaaag |
312 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||||||| |||| |||||||||||| ||| ||||||||| |||||| ||||||||| |
|
|
| T |
32710294 |
aggagataggaggtaccttgggggttatgcaaatttctagctcgagaagttcagaagaaccaaaatgaccaaatggaatcacgaggaacgttgatgaaag |
32710195 |
T |
|
| Q |
313 |
agttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggaccca |
412 |
Q |
| |
|
| ||||||| ||| ||||||| |||||| |||||||||||| |||| ||||||| | |||| | |||||||||||||| |||| | | || |
|
|
| T |
32710194 |
atctgctaaactaacgcgttggacattcttcggaaaagactgtaacttcaaactgcatatttgagacctggccaatatatcatactgataccacggctca |
32710095 |
T |
|
| Q |
413 |
gaagagttaggaccaatgcagcaaatattgactgcatttcccaaactca |
461 |
Q |
| |
|
||| |||||||||||||||||| |||| |||| |||||||||| ||||| |
|
|
| T |
32710094 |
gaatagttaggaccaatgcagctaatactgaccgcatttcccagactca |
32710046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 112 - 455
Target Start/End: Original strand, 32557757 - 32558103
Alignment:
| Q |
112 |
ggcatttgcaaaactgatgaatttgagataaataaaatgctagtgtataaatccaaaacattcaagatattaataagacttcaattggacaaaaaaccaa |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| ||||| || | |||||| |||| || ||||||| ||||||| ||| ||| || |
|
|
| T |
32557757 |
ggcatttgaaaaactgatgaatttgagataaa----atgctagagtatatattcgaaacataaaagaattttgtaagactataattggaaaaacaacgaa |
32557852 |
T |
|
| Q |
212 |
agcaaagaaaaggagatagggcataccatgggggttatgcaaatgtctagcttgagaggttcagaagaacgaaa---------tggaatcacaaggaact |
302 |
Q |
| |
|
|| || ||| |||||| || |||| |||||||||||||||| ||||||| ||| |||| |||||||| ||| |||||||| || ||| |
|
|
| T |
32557853 |
agtaatgaagaggagaagagg--taccttgggggttatgcaaatttctagctcgagtggtttagaagaaccaaaataaccaaatggaatcatgagatact |
32557950 |
T |
|
| Q |
303 |
ctgatgaaagagttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactata |
402 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||| |||||| | |||| || || ||||| | || ||| |||| |||||||||||||||||||||| |
|
|
| T |
32557951 |
ctgatgaatgagttgctgaagtagaccgttggatattcttcggagaagaatggaacttcagacgggatgtcttagacctagccaatatatcataactata |
32558050 |
T |
|
| Q |
403 |
ctcggacccagaagagttaggaccaatgcagcaaatattgactgcatttccca |
455 |
Q |
| |
|
||| |||||||||| | ||||||||| |||||||||||||||||||| |
|
|
| T |
32558051 |
accggcttcagaagagttgacatcaatgcagctaatattgactgcatttccca |
32558103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 25477573 - 25477501
Alignment:
| Q |
203 |
aaaaaccaaagcaaagaaaaggagatagggcataccatgggggttatgcaaatgtctagcttgagaggttcag |
275 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
25477573 |
aaaaaacaaagtaaagaaaaggatataggaggtaccatgggggttatgcaaatttctatcttgagaggttcag |
25477501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 28475146 - 28475014
Alignment:
| Q |
36 |
aaatcaataagagaaattttgagacaaatatttcaagaactgatacaaaaatagagaacactagcaacc-nnnnnnnggcatttgcaaaactgatgaatt |
134 |
Q |
| |
|
|||||| ||| ||||| |||||||| | |||||||||||| || |||||||||| ||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
28475146 |
aaatcagtaaaagaaaatttgagactgacatttcaagaactaatccaaaaatagaaaacactaacaaccttagttttggcatttcaaaaactgatgaatt |
28475047 |
T |
|
| Q |
135 |
tgagataaataaaatgctagtgtataaatccaaaaca |
171 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||| |
|
|
| T |
28475046 |
tgag----ataaaatgctatagtataaattcaaaaca |
28475014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 215 - 466
Target Start/End: Complemental strand, 21524656 - 21524402
Alignment:
| Q |
215 |
aaagaaaaggagatagggcataccatgggggttatgcaaatgtctagcttgagaggt---tcagaagaacgaaatggaatcacaaggaactctgatgaaa |
311 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||| |||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
21524656 |
aaagaaaaggagataggaggtaccatgggggttatgcaaatatctagcttatgaggtggttcaaaagaaccaaatggaatcacaaggcactctcatgaaa |
21524557 |
T |
|
| Q |
312 |
gagttgctaaagtaaactgttggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggaccc |
411 |
Q |
| |
|
||||| |||||||||| ||| || | ||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| | |
|
|
| T |
21524556 |
gagttaataaagtaaaccgttagaagtatttcacaaaagactgtaatttcaatttgcatatctcagacctagccaatatatcataactatacttggactc |
21524457 |
T |
|
| Q |
412 |
agaagagttaggaccaatgcagcaaatattgactgcatttcccaaactcatagta |
466 |
Q |
| |
|
| |||||||| |||||||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
21524456 |
aaaagagttatgaccaatgcaacaaatattaactgcatttcctaaactcatagta |
21524402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 477 - 647
Target Start/End: Complemental strand, 21524369 - 21524198
Alignment:
| Q |
477 |
ttcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctg |
576 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||| |||| |
|
|
| T |
21524369 |
ttcctcttgaagaacaatggtttcaactttagacttcaaggagacaatgaaggagtggccatacgaaaatttgatttgagaatccctgtgtttaaagctg |
21524270 |
T |
|
| Q |
577 |
aaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaa-ggggcaggaacatggctcatag |
647 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
21524269 |
aaatggtttgacaacacttctgatgatgcaacaaagtcacaacctgaaagggggcagtaacatggctcatag |
21524198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 2166603 - 2166655
Alignment:
| Q |
120 |
caaaactgatgaatttgagataaataaaatgctagtgtataaatccaaaacat |
172 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
2166603 |
caaaactggtgaatttgagataaaaaaaatgctagagtataaattcaaaacat |
2166655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 141 - 475
Target Start/End: Complemental strand, 16757170 - 16756829
Alignment:
| Q |
141 |
aaataaaatgctagtgtataaatccaaaacattcaagatattaataagacttcaattggacaaaaaaccaaagcaaagaaaaggagatagggcataccat |
240 |
Q |
| |
|
||||||| |||||| |||||||| |||||||| |||||| ||||||||||| ||| ||| ||||| ||||||||||||||||| ||||| |||| | |
|
|
| T |
16757170 |
aaataaattgctagagtataaattcaaaacataaaagataataataagactttaataggaaaaaaa--caaagcaaagaaaaggaaataggtggtaccgt |
16757073 |
T |
|
| Q |
241 |
gggggtt---------atgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgt |
331 |
Q |
| |
|
||||||| |||||||| | |||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16757072 |
gggggttgtgggagttatgcaaattacaagctcgagaggttcagaagaaccaattggaatcacaaggaactctgatgaaagagttgctaaagtaacttga |
16756973 |
T |
|
| Q |
332 |
tggacgctcttcgcaaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggacccagaag-agttaggaccaatg |
430 |
Q |
| |
|
|| | |||| ||||| || |||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||| | |
|
|
| T |
16756972 |
tgcaaattctttgcaaacgagtgtaatttcagtttgcatttctgagacctagccgatatatcataactatactcggacacagaagcagtt-ggaccaaag |
16756874 |
T |
|
| Q |
431 |
cagcaaatattgactgcatttcccaaactcatagtattgttattt |
475 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
16756873 |
caacaaatattgactgcatttcccaaaagcatagtactgtaattt |
16756829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 245 - 457
Target Start/End: Complemental strand, 16752554 - 16752342
Alignment:
| Q |
245 |
gttatgcaaatgtctagcttgagaggttcagaagaacgaaatggaatcacaaggaactctgatgaaagagttgctaaagtaaactgttggacgctcttcg |
344 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| | |||||||| ||||||||||| |||||||||| ||||||||| ||||||||| || | |
|
|
| T |
16752554 |
gttatgcaaatttctagcttgagaggtttggaagaaccatttggaatcataaggaactctggtgaaagagttcctaaagtaacctgttggacattcgtta |
16752455 |
T |
|
| Q |
345 |
caaaagactgtaatttcagtttgcatatctcagacttagccaatatatcataactatactcggacccagaagagttaggaccaatgcagcaaatattgac |
444 |
Q |
| |
|
||||||| |||||||||||||||||| ||| |||| | ||| ||| ||||||||||||||||| | |||| || ||||||| ||||||||||||||| |
|
|
| T |
16752454 |
caaaagagtgtaatttcagtttgcatctctgagacctggccttgataccataactatactcggactcggaagcatttggaccaaagcagcaaatattgac |
16752355 |
T |
|
| Q |
445 |
tgcatttcccaaa |
457 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
16752354 |
tgcattccccaaa |
16752342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 475 - 659
Target Start/End: Complemental strand, 16752296 - 16752111
Alignment:
| Q |
475 |
tattcctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggc |
574 |
Q |
| |
|
|||| ||||||||||| ||| | ||| ||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||||| | ||||||| || |
|
|
| T |
16752296 |
tatttctcttgaagaataattgcatcatcatcagacttcaaggagacaatgaaagattgaccataagaaaatttgatttgagaatcctcgtgtttattgc |
16752197 |
T |
|
| Q |
575 |
tgaaatggttggacaacacttctgacgacgcaacaaagtcacaacctgaaa-ggggcaggaacatggctcatagatacattcttct |
659 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||| ||||||||||||| |||||| ||||||| ||||||| |||| |||| |
|
|
| T |
16752196 |
tgaaatggttggacaacacctctgatgaggcaacaaaatcacaacctgaaatggggcaataacatgggacatagatgcatttttct |
16752111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 480 - 659
Target Start/End: Complemental strand, 16756772 - 16756592
Alignment:
| Q |
480 |
ctcttgaagaacaatggtttcaccattagacttcaaggagacaatgaaggagtgaccataagaaaattcgatttgagaatccccatgtttatggctgaaa |
579 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||||||||| || || |||||| |||| | ||||||||||||| | ||||||||||||||| |
|
|
| T |
16756772 |
ctcttgaagaacaatgacttcatcatcagacttcaaggagacaagaaaagaaaatccataataaaaattgatttgagaatcctcgtgtttatggctgaaa |
16756673 |
T |
|
| Q |
580 |
tggttggacaacacttctgacgacgcaacaaagtcacaacctgaaa-ggggcaggaacatggctcatagatacattcttct |
659 |
Q |
| |
|
|||| ||||||||| ||||| || |||||||||||||||||||||| |||||| |||||||| ||||||| ||||||||| |
|
|
| T |
16756672 |
tggtcggacaacacctctgatgaagcaacaaagtcacaacctgaaagggggcaataacatggcacatagatgcattcttct |
16756592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University