View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11248_low_13 (Length: 249)
Name: NF11248_low_13
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11248_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9363230 - 9362999
Alignment:
| Q |
1 |
aatccgtgtgattttgtatgtatgaatgttagtctaactttgtagacatctgtaataaaacttttacattagtccaaccttacatgaattgtatttttgc |
100 |
Q |
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| T |
9363230 |
aatctgtgtgattttgtatgtatgaatgttagtctaactttatagtcatctgtaataaaacttttacattagtccaaccttacatgaattgtatttttgc |
9363131 |
T |
|
| Q |
101 |
tttataatatgtgaaaactcttggcaaccagcctagttatgtattaattgtgtgatccatctacaatctccttaacctccaattttagttgcttttgttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9363130 |
tttataatatgtgaaaactcttggcaaccagcctagttatgtattaattgtgtgatccatctacattctccttaacctccaattttagttgcttttgttt |
9363031 |
T |
|
| Q |
201 |
cattattggtcttttgtttcaagaatcatact |
232 |
Q |
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|||||||||||||||||||||| ||||||||| |
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| T |
9363030 |
cattattggtcttttgtttcaacaatcatact |
9362999 |
T |
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