View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11248_low_15 (Length: 239)

Name: NF11248_low_15
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11248_low_15
NF11248_low_15
[»] chr4 (5 HSPs)
chr4 (59-222)||(56000998-56001161)
chr4 (55-222)||(3528412-3528570)
chr4 (143-215)||(27615298-27615371)
chr4 (1-95)||(47667343-47667437)
chr4 (56-92)||(29665434-29665470)
[»] chr7 (3 HSPs)
chr7 (140-222)||(45720642-45720724)
chr7 (1-144)||(45721574-45721717)
chr7 (56-98)||(45089677-45089719)
[»] chr3 (2 HSPs)
chr3 (1-95)||(47766808-47766902)
chr3 (56-98)||(48253153-48253195)
[»] chr8 (1 HSPs)
chr8 (55-103)||(24068535-24068580)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 56001161 - 56000998
Alignment:
Q  59 tcttctctcttctacctcctcatgtcttcattaactttttccagannnnnnnncttttcaaaaacctaaatccatctatatacatagctatagttaatag 158  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||||||||| |||||||    
T  56001161 tcttctctcttcttcctcctcatgtcttcattaactttttccaaaaaaaatttcttttcaaaaacctaaatccatctatatacatagctatatttaatag 56001062  T
Q  159 tgaagaggtgtgaacaaaaaccagacacaacacacactttaccctttaggttcttgttctttga 222  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  56001061 tgaagaggtgtgaacagaaaccagacacaacacacactttaccctttaggttcttgttctttga 56000998  T

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Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 55 - 222
Target Start/End: Original strand, 3528412 - 3528570
Alignment:
Q  55 atcatcttctctcttctacctcctcatgtcttcattaactttttccagannnnnnnncttttcaaaaacctaaatccatctatatacatagctatagtta 154  Q
    ||||||||||||||||  |||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||||| |||||||||    
T  3528412 atcatcttctctcttcctcctcctcatgtcttaattaacttttt---------ttttcttttcaaaaacctaaatccatctatatacataactatagtta 3528502  T
Q  155 atagtgaagaggtgtgaacaaaaaccagacacaacacacactttaccctttaggttcttgttctttga 222  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  3528503 atagtgaagaggtgtgaacagaaaccagacacaacacacactttaccctttaggttcttgttatttga 3528570  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 27615298 - 27615371
Alignment:
Q  143 tagctatagtt-aatagtgaagaggtgtgaacaaaaaccagacacaacacacactttaccctttaggttcttgt 215  Q
    ||||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  27615298 tagctatagtttaacagtgaagaggtgtgaatagaaaccagacacaacacacactttaccctttacgttcttgt 27615371  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 47667343 - 47667437
Alignment:
Q  1 catgttcattgtatctaataatgaaccgccagcacctaannnnnnncacgttttatcatcttctctcttctacctcctcatgtcttcattaactt 95  Q
    ||||| |||||||||||||| ||||||| ||||||||||       ||| ||| ||||||||||||||||| | |||||||||| ||||||||||    
T  47667343 catgtccattgtatctaatagtgaaccgtcagcacctaatttttttcacttttcatcatcttctctcttcttcttcctcatgtcgtcattaactt 47667437  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 29665470 - 29665434
Alignment:
Q  56 tcatcttctctcttctacctcctcatgtcttcattaa 92  Q
    |||||||||||||||| | ||||||||||||||||||    
T  29665470 tcatcttctctcttcttcttcctcatgtcttcattaa 29665434  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 45720724 - 45720642
Alignment:
Q  140 acatagctatagttaatagtgaagaggtgtgaacaaaaaccagacacaacacacactttaccctttaggttcttgttctttga 222  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  45720724 acataactatagttaatagtgaagaggtgtgaacaaaaaccagacacaacatacactttaccctttaggttcttgttctttga 45720642  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 45721717 - 45721574
Alignment:
Q  1 catgttcattgtatctaataatgaaccgccagcacctaannnnnnncacgttttatcatcttctctcttctacctcctcatgtcttcattaactttttcc 100  Q
    |||||||||||||||||||||||||||| ||| ||||||       ||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  45721717 catgttcattgtatctaataatgaaccgtcagtacctaatttttttcactttttatcatcttctcccgtctacctcctcatgtcttcgttaactttttcc 45721618  T
Q  101 agannnnnnnncttttcaaaaacctaaatccatctatatacata 144  Q
    |||        |||||||||||||||||||||||||||||||||    
T  45721617 agattttttttcttttcaaaaacctaaatccatctatatacata 45721574  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 45089677 - 45089719
Alignment:
Q  56 tcatcttctctcttctacctcctcatgtcttcattaacttttt 98  Q
    |||||||||||||||| | ||||||| ||||||||||||||||    
T  45089677 tcatcttctctcttcttcttcctcatttcttcattaacttttt 45089719  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 47766902 - 47766808
Alignment:
Q  1 catgttcattgtatctaataatgaaccgccagcacctaannnnnnncacgttttatcatcttctctcttctacctcctcatgtcttcattaactt 95  Q
    ||||| |||||||||||||| ||||||| ||||||||||       ||| ||| ||||||||||||||||| | | |||||||| ||||||||||    
T  47766902 catgtccattgtatctaatagtgaaccgtcagcacctaatttttttcacttttgatcatcttctctcttcttctttctcatgtcgtcattaactt 47766808  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 48253153 - 48253195
Alignment:
Q  56 tcatcttctctcttctacctcctcatgtcttcattaacttttt 98  Q
    |||||||||||||||| | ||||||||||||||||||||||||    
T  48253153 tcatcttctctcttcttcttcctcatgtcttcattaacttttt 48253195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 24068535 - 24068580
Alignment:
Q  55 atcatcttctctcttctacctcctcatgtcttcattaactttttccaga 103  Q
    |||||||||||||||||   ||||||||||||||||||| |||||||||    
T  24068535 atcatcttctctcttct---tcctcatgtcttcattaaccttttccaga 24068580  T

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