View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11248_low_2 (Length: 591)
Name: NF11248_low_2
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11248_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Original strand, 26059 - 26633
Alignment:
| Q |
1 |
ccctaaaataaacaagacgggaacttttacatcagaagcaacaagcgaatctatccttgtaccataaaaggagattccagtgccgaagcaagcatcttgg |
100 |
Q |
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| T |
26059 |
ccctaaaataaacaagacgggaacttttacatcagaagcaacaagcgaatctatccttgtaccataaaaggagattccagtgccgaagcaagcatcttgg |
26158 |
T |
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| Q |
101 |
tcttgggctaggacctctaacactttgcctcctccaaagcaaaaaccaattatgccaagttttctggaaactccttcagtcatgaattcatctgccagcc |
200 |
Q |
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| T |
26159 |
tcttgggctaggacctctaacactttgcctcctccaaagcaaaaaccaattatgccaagttttctggaaactccttcagtcatgaattcatctgccagcc |
26258 |
T |
|
| Q |
201 |
actctgtccacgcggtaatgtcttttgcaatcctctcagggttatgtccagtaatccattgttcaaactgagtgtttggctggtcctttgtccatggatt |
300 |
Q |
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| T |
26259 |
actctgtccacgcggtaatgtcttttgcaatcctctcagggttatgtccagtaatccattgttcaaactgagtgtttggctggtcctttgtccatggatt |
26358 |
T |
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| Q |
301 |
tccgcgaaataagtctggaagtagaatgctgcaaatttgtgtagaagaagtaaataaatatgcctaagagaggataacataacatacactttgaaaccag |
400 |
Q |
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| T |
26359 |
tccacgaaataagtctggaagtagaatgctgcaaatttgtgtagaagaagtaaataaatatgcctaagagaggataacataacatacactttgaaaccag |
26458 |
T |
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| Q |
401 |
tatgttgaagatagctaaggtatggatacgtacttgaaaccattgcaagctactcgatatgcaaaatctcttgtggaggagtcctcaaacccataaacat |
500 |
Q |
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| T |
26459 |
tatgttgaagatagctagggtatggatacgtacttgaaaccattgcaagctactcgatatgcaaaatctcttgtggaggagtcctcaaacccataaacat |
26558 |
T |
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| Q |
501 |
cagaaagaagcaataggccaattccattgttattttttactgccttgaaaagataagcatgaacattatcatcgc |
575 |
Q |
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| T |
26559 |
cagaaagaagcaataggccaattccattgttattttttactgccttgaaaagataagcatgaacattatcatcgc |
26633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 52 - 340
Target Start/End: Original strand, 21352590 - 21352881
Alignment:
| Q |
52 |
tatccttgtaccataaaaggagattccagtgccgaagcaagcatcttggtcttgggctaggacctctaacactttgcctcctccaaagcaaaaaccaatt |
151 |
Q |
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| T |
21352590 |
tatccttgtaccaaaaaaggagagtccaatgccaaaacaagcatcttggtcttggcctagcacctctaatactttgctgcgtccaaagcaaaaaccaatt |
21352689 |
T |
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| Q |
152 |
atgccaagttttctggaaactccttcagt---catgaattcatctgccagccactctgtccacgcggtaatgtcttttgcaatcctctcagggttatgtc |
248 |
Q |
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| T |
21352690 |
acgccaagttttttgaaaactccttcagtagtcatgaactcacctgtcagccattctgtccacgcggtaatgtcttttgcaatcttctccgggttatgtg |
21352789 |
T |
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| Q |
249 |
cagtaatccattgttcaaactgagtgtttggctggtcctttgtccatggatttccgcgaaataagtctggaagtagaatgctgcaaatttgt |
340 |
Q |
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| T |
21352790 |
taacaatccatttttcaaactgagtgtttcgctggtcctttgtccaaggatttccgcaaaataaattgggaagtagaatgctgcaaatttgt |
21352881 |
T |
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