View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11248_low_3 (Length: 572)
Name: NF11248_low_3
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11248_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 7336168 - 7336541
Alignment:
| Q |
19 |
agatcaatctcagcatcaaaatcaccaattaacttttactcttcatttattttaaattgaagcaaaaaagaagcaaccgtataaataaaactaatctaaa |
118 |
Q |
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| T |
7336168 |
agatcaatctcagcatcaaaatcaccaattaacttttactcttcatttattttaaattgaagcaaaaaagaagcaaccgtataaataaa-ctaatctaaa |
7336266 |
T |
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| Q |
119 |
aatcagttgcaacatttcaaaagagagtaaacacaaaccaaaacaattgatgatcataattgagaggatgaaaatgaagatgttggtgactcaagataaa |
218 |
Q |
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| T |
7336267 |
aatcagttgcaacatttcaaaagagagtaaacacaaaccaaaacaattgatgatcataattgagaggatgaaaatgaagatgttggtgactcaagataaa |
7336366 |
T |
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| Q |
219 |
cctccaaaaagcttttgagacacttcactctatccaactgagctaacaaattagctctaatagttttcaccaacatatcatccaactgagaaactttgat |
318 |
Q |
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| T |
7336367 |
cctccaaaaagcttttgagacacttcactctatccaactgagctaacaaattagctctaatagttttcaccaacatatcatccaactgagaaactttgat |
7336466 |
T |
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| Q |
319 |
agtgtccaggatattcaactgaccaactacattccccaagacaacatccaactgagcaactatattcatcaacaa |
393 |
Q |
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| T |
7336467 |
agtgtccaggatattcaactgaccaactacattccccaagacaacatccaactgagcaactatattcatcaacaa |
7336541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 7303253 - 7303290
Alignment:
| Q |
118 |
aaatcagttgcaacatttcaaaagagagtaaacacaaa |
155 |
Q |
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| T |
7303253 |
aaatcagttgtaacatttcaaaagagagtaaacacaaa |
7303290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 7332258 - 7332310
Alignment:
| Q |
192 |
atgaagatgttggtgactcaagataaacctccaaaaagcttttgagacacttc |
244 |
Q |
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| T |
7332258 |
atgaagatgttgttgacttgagataaaccttcagaaagcttttgagacacttc |
7332310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 7365410 - 7365477
Alignment:
| Q |
123 |
agttgcaacatttcaaaagagagtaaacacaaaccaaaacaattgatgatcataattgagaggatgaa |
190 |
Q |
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| T |
7365410 |
agttgcaacatttcaaaagagattaaaagcaaaacgaaaccattgataatcataactgagaagatgaa |
7365477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 7322905 - 7322966
Alignment:
| Q |
192 |
atgaagatgttggtgactcaagataaacctccaaaaagcttttgagacacttcactctatcc |
253 |
Q |
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| T |
7322905 |
atgaagatgttgctgacttacgataaatcttcagaaagattttgagacacttcaatctatcc |
7322966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 7322775 - 7322814
Alignment:
| Q |
56 |
actcttcatttattttaaattgaagcaaaaaagaagcaacc |
96 |
Q |
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| T |
7322775 |
actcttcattcattttaaattgaagc-aaaaagaagcaacc |
7322814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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