View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11248_low_7 (Length: 331)
Name: NF11248_low_7
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11248_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 23088403 - 23088670
Alignment:
| Q |
11 |
cacagaccatcaaattcatactaccacagagcacccttcaattcaaataaaccagaaaatacccaaaaatcaaaccacactcctctccttcaaaccccac |
110 |
Q |
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| T |
23088403 |
cacacaccatcaaattcatactaccacagagcacccttcaattcaaataaaccagaaaatacccaaaaatcaaaccacactcctctccttcaaaccccac |
23088502 |
T |
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| Q |
111 |
caacaagacccatgaaccccaatcaaagaaacccaaacatcaaaagaatttccccagctgaaatgcaattgagaagagaaaaaggtctatgctactggtg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
23088503 |
caacaagacccatgaaccccaatcaaagaaacccaaacatgaaaagaatttccccagctgaaatgcaactgagaagagaaaaagggctatgctactggtg |
23088602 |
T |
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| Q |
211 |
tgatgaacctttttccataacacacaaatgtccaaatcgccaagtgatgatgctgcaatatgatgaca |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23088603 |
tgatgaacctttttccataacacacaaatgtccaaatcgccaagtgatgatgctgcaatatgatgaca |
23088670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 1496743 - 1496708
Alignment:
| Q |
278 |
agttatatgttggagaaaagttaacatatcatgtat |
313 |
Q |
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| T |
1496743 |
agttatatgttggagaaaagttaacatatcatgtat |
1496708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 23089155 - 23089190
Alignment:
| Q |
278 |
agttatatgttggagaaaagttaacatatcatgtat |
313 |
Q |
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| T |
23089155 |
agttatatgttggagaaaagttaacatatcatgtat |
23089190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 11824117 - 11824152
Alignment:
| Q |
278 |
agttatatgttggagaaaagttaacatatcatgtat |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
11824117 |
agttatatgttggaaaaaagttaacatatcatgtat |
11824152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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