View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11248_low_9 (Length: 288)
Name: NF11248_low_9
Description: NF11248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11248_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 1155558 - 1155296
Alignment:
| Q |
1 |
gatgcatgactaacatgaccatgtttgcatctgctgacccagtctcatttgaggaagctgtgaagagtgaaaaacggagaaatgcaatgaacttggaaat |
100 |
Q |
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| T |
1155558 |
gatgcatgactaacatgaccatgtttgcatctgctgacccaatctcatttgaggaagctgtgaagagtgaaaaacggagaaatgcaatgaacttggaaat |
1155459 |
T |
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| Q |
101 |
agaatcaattgagaataatgactcttggaagttgacagatttaccggctgacagaaagaagattagagtgaaatggatattcaaaacaaagctcaatgag |
200 |
Q |
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| T |
1155458 |
agaatcaattgagaataatgactcttggaagttgacagatttaccggctgacggaaagaagattagagtgaaatggatattcaaaacaaagctcaatgag |
1155359 |
T |
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| Q |
201 |
aatggagaaatagataaatacaaagcaagacttgtggaaaaaagatatgctcaacaacatggt |
263 |
Q |
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| T |
1155358 |
aatggagaaatagataaatacaaagcaagacttgtggaaaaaagatatgctcaacaacatggt |
1155296 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 237
Target Start/End: Original strand, 11850127 - 11850181
Alignment:
| Q |
183 |
aaaacaaagctcaatgagaatggagaaatagataaatacaaagcaagacttgtgg |
237 |
Q |
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| T |
11850127 |
aaaactaagctcaatgagaatggagagatagataagtacaaggcgagactagtgg |
11850181 |
T |
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