View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11249_high_1 (Length: 589)
Name: NF11249_high_1
Description: NF11249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11249_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 30340193 - 30339819
Alignment:
| Q |
14 |
tggacatcagcgtggtgggaggatttatttgatgatatagggaggggaaagagagtggcaaggagagtttgatttaaggagagggtgggtcgaatagttg |
113 |
Q |
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| T |
30340193 |
tggacatcagcgtggtgggaggatttatttgat---atagggaggggaaagagagtggcaaggcgagtttgatttaaggagagggtgggtcgaatagttg |
30340097 |
T |
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| Q |
114 |
tcaacactaggaagtggaatgaagaaattat--gtcatg--ttatgtgagggatttgaataaaattttaaaaataccacttctt---------------- |
193 |
Q |
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| T |
30340096 |
tcaacactaggaagtggaatgaagaaattatttgtcatgcgttatgtgagggatttgaataaaattttaaaaataccacttcttaacctatgataaataa |
30339997 |
T |
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| Q |
194 |
-----cggttcactaaaaaagatttatatccaattaagagtgcttgtagggtatgcgtgaatttgttaataaattgagatgattggaaaattgaaggtga |
288 |
Q |
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| T |
30339996 |
cttggcggttcactaaaaaagatttatatccaattaagagtgcttgtagggtatgtgtgaatttgttaataaattgagatgattggaaaatggaaggtga |
30339897 |
T |
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| Q |
289 |
ttggaagagattattggtgactatttattccttctattgtcactcaaattgtgtagtgtgttagacatatattgaata |
366 |
Q |
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| T |
30339896 |
ttggaagagattattggtgactatttattccttctattgtcactcaaattgtgtagtgtgttagacatatattgaata |
30339819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 361 - 541
Target Start/End: Complemental strand, 30339632 - 30339452
Alignment:
| Q |
361 |
tgaatataactagcatattttcatttgttgtcatgatagtattgcatgttgggataaatgttgatgcggagatctttggaacggagcaaaaagtgatatt |
460 |
Q |
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| T |
30339632 |
tgaatataactagcatattttcatttgttgtcatgatagtattgcatgttgggataaatgttgatgcggagatctttggaacggagcaaaaagtgatatt |
30339533 |
T |
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| Q |
461 |
gggagcatgtcttagagatgtagatggtaactttgttatggtgatgacaacttttttcgatgttgttatgtctccaactga |
541 |
Q |
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| T |
30339532 |
gggagcatgtcttagagatgcagatggtaactttgttatggtgatgacaacttttttcgatgttgttatgtctccagctga |
30339452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 28518841 - 28518769
Alignment:
| Q |
222 |
ttaagagtgcttgtagggtatgcgtgaatttgttaataaattgagatgattggaaaattgaaggtgattggaa |
294 |
Q |
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| T |
28518841 |
ttaagagtgcttatagggtatgtgtggatgtgctaataaatcaagataagtggaaagtggaaggtgattggaa |
28518769 |
T |
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