View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11249_high_6 (Length: 249)
Name: NF11249_high_6
Description: NF11249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11249_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 5902356 - 5902565
Alignment:
| Q |
20 |
cttaacaaaccaaaatcaaatatattaacaataaaaagcatctcttatagtataagatatattggagagaaacaccaaaatcttacaaatgataatcaag |
119 |
Q |
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| T |
5902356 |
cttaacaaaccaaaatcaaatatattaacaataaaaagcatctcttatagtataagatatatcggagagaaacaccaaaatcttacaaatgataatcaag |
5902455 |
T |
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| Q |
120 |
caagccaaaatgagaaggattacaaaagagttgttagccaatattcaaacaagagaaaggactaagttgtcggccatgataacgaaaagttaatttaacg |
219 |
Q |
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| T |
5902456 |
caagccaaaatgagaaggaaaacaaaagagttgttagccaatgttcaaacaagagaaaggactaagttgtcggccatgataacgaaaagctaatttaacg |
5902555 |
T |
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| Q |
220 |
tatcttttct |
229 |
Q |
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|||||||||| |
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| T |
5902556 |
tatcttttct |
5902565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 19354726 - 19354622
Alignment:
| Q |
31 |
aaaatcaaatatattaacaataaaaagcatctcttatagtataagatatattggagagaaacaccaaaatcttacaaatgataatcaagcaagccaaaat |
130 |
Q |
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||||| ||||||||||||||||| |||||| ||| || | |||||||| | ||||||||||||||| |||||| ||| ||||||||||| ||| || |
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| T |
19354726 |
aaaatgaaatatattaacaataataagcatttctcctaacaaaagatatactagagagaaacaccaaagtcttaccaatcgtaatcaagcaaaccataaa |
19354627 |
T |
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| Q |
131 |
gagaa |
135 |
Q |
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||||| |
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| T |
19354626 |
gagaa |
19354622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 19353118 - 19353019
Alignment:
| Q |
24 |
acaaaccaaaatcaaatatattaacaataaaaagcatctcttatagtataagatatattggagagaaacaccaaaatcttacaaatgataatcaagcaag |
123 |
Q |
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||||| |||||| ||||||||||||||||| |||||| ||| || | |||||||||| |||||||||| ||| |||||| ||| | |||||||||| |
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| T |
19353118 |
acaaagcaaaatgaaatatattaacaataataagcatttctcctaacacaagatatattaaagagaaacactaaagtcttaccaatcgttatcaagcaag |
19353019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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