View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11249_low_1 (Length: 643)
Name: NF11249_low_1
Description: NF11249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11249_low_1 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Complemental strand, 54632091 - 54631429
Alignment:
| Q |
1 |
ggttaatatcaaaatacaattaagtagtagaaggacaacatatactattgagaattttccatgaaagcactgtcaatgtcctcaaaaagtcagtta---- |
96 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54632091 |
ggttaatatcaaaatacaattaagtagtagaaggacaacatatactattgagaattttccatgaaagcactgtcaatgtcctcaaaaagtcagtcaagaa |
54631992 |
T |
|
| Q |
97 |
---------ttcacctagaacttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttcca |
187 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54631991 |
aagaacttcttcacctagaagttgaagagttcagatttcatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttcca |
54631892 |
T |
|
| Q |
188 |
acaaagtaagaccatcatcttctttaacagaagtcttcgcaagaaatttcaacacatcaaaaacagttaacgtctccttctccttatccttatccttatc |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
54631891 |
acaaagtaagaccatcatcttctttaacagaagtcttcgcaagaaatttcaacacatcaaaaacagttaacgtctccttctccttctccttctccttatc |
54631792 |
T |
|
| Q |
288 |
ct---------cctccccagaccccctttcatttgcag---------------aagagccaattgacttgtttccctcaacatcaaccatgttaacatcc |
363 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54631791 |
cttatccttatcctccccagaccccctttcatttgcagtcgctttctcgaaagaagagccaattgacttgtttccctcaacatcaaccatgttaacatcc |
54631692 |
T |
|
| Q |
364 |
tcagcatcattttgaacaacttgttgttgggtttcaacattttcctccaaagaatcaaacccaaattcgtcgtgaaaactagaaatttcgttttcaaaaa |
463 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
54631691 |
tcagcatcattttgaacaacttgttgttgggtttcaacattttcctccaaagaatcaaacccaaattcgtcgtgaaaactagaaatttctttttcaaaaa |
54631592 |
T |
|
| Q |
464 |
ttctgagtttatcagaattctgctcaacattcataggatcaaaccctaatttcataggagccttatcaaaatcagaaattgccctatccaaagcgctaaa |
563 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54631591 |
ttctgagtttatcagaatcctgctcaacattcataggatcaaaccctaatttcataggagccttatcaaaatcagaaattaacctatccaaagcgctaaa |
54631492 |
T |
|
| Q |
564 |
ttcatcaggatgtatctcgggaaactcactcagtagatcttcttcaagagagcgtgacttttc |
626 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54631491 |
ttcatcaggatgtatctcgggaaactcactcagtagatcttcttcaagagagcgtgacttttc |
54631429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 326 - 430
Target Start/End: Original strand, 45313733 - 45313834
Alignment:
| Q |
326 |
ttgacttgtttccctcaacatcaaccatgttaacatcctcagcatcattttgaacaacttgttgttgggtttcaacattttcctccaaagaatcaaaccc |
425 |
Q |
| |
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||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||||||| |
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| T |
45313733 |
ttgacttatttccctcaacatcaatcatgttaatatcctcagcatcattttgaacagc---ttgttgggtttcaacatttttctccaaagaaacaaaccc |
45313829 |
T |
|
| Q |
426 |
aaatt |
430 |
Q |
| |
|
||||| |
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|
| T |
45313830 |
aaatt |
45313834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 39487130 - 39487232
Alignment:
| Q |
109 |
ttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatctt |
208 |
Q |
| |
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||||||| ||| |||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||| |||||| | || ||||||| || |||||| |
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| T |
39487130 |
ttgaagatttcggatttcatatcgtccggccaccagcttggacgaggaaaagtaataccagcacgcttcccagtttcgaccacagtaagaacaccatctt |
39487229 |
T |
|
| Q |
209 |
ctt |
211 |
Q |
| |
|
||| |
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|
| T |
39487230 |
ctt |
39487232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 593
Target Start/End: Original strand, 45313842 - 45313927
Alignment:
| Q |
513 |
tttcataggagccttatcaaaatcagaaattgccctatcc-----aaagcgctaaattcatcaggatgtatctcgggaaactcact |
593 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||| ||| |||||| ||||| |||| |||||| ||||||||||| |
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| T |
45313842 |
tttcataggagccttatcaacattagaaattgccctatcctatccaaaatgctaaaatcatccggatttatctcaggaaactcact |
45313927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 8059 - 7958
Alignment:
| Q |
109 |
ttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatctt |
208 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||| || |||||||||||||||||||| |||||||| | || |||||||||||||||||||||||||| |
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| T |
8059 |
ttgaagagttcagatttcatatcgtccgaccaccaacttggacgaggaaatttaataccggcacgcttaagagattccaacaaagtaagaccatcatctt |
7960 |
T |
|
| Q |
209 |
ct |
210 |
Q |
| |
|
|| |
|
|
| T |
7959 |
ct |
7958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 18189535 - 18189389
Alignment:
| Q |
109 |
ttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatctt |
208 |
Q |
| |
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|||||||||| ||||| |||||| || |||||||| || |||||||| || |||| ||||| |||||||| |||||||| |||||||||||||||||||| |
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| T |
18189535 |
ttgaagagttgagatttcatatcctccggccaccaacttggacgaggtaaattaacaccagaacgctttagagtttccagcaaagtaagaccatcatctt |
18189436 |
T |
|
| Q |
209 |
c---tttaacagaagtcttcgcaagaaatttcaacacatcaaaaaca |
252 |
Q |
| |
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| |||| |||| |||| || ||||||||||| |||||||||||| |
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| T |
18189435 |
cttttttatcagatgtctctgcgagaaatttcaatacatcaaaaaca |
18189389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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