View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11249_low_3 (Length: 343)

Name: NF11249_low_3
Description: NF11249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11249_low_3
NF11249_low_3
[»] chr7 (31 HSPs)
chr7 (79-328)||(27598157-27598406)
chr7 (12-113)||(21416150-21416251)
chr7 (11-104)||(23569020-23569113)
chr7 (9-71)||(27598030-27598092)
chr7 (11-112)||(21416441-21416542)
chr7 (33-81)||(14681579-14681627)
chr7 (35-82)||(34218074-34218121)
chr7 (14-76)||(48071436-48071498)
chr7 (34-83)||(9901713-9901762)
chr7 (34-83)||(24838740-24838789)
chr7 (31-83)||(23416-23468)
chr7 (31-83)||(1085655-1085707)
chr7 (31-83)||(16569263-16569315)
chr7 (31-83)||(16596347-16596399)
chr7 (31-83)||(22567078-22567130)
chr7 (31-83)||(29157632-29157684)
chr7 (31-83)||(30245144-30245196)
chr7 (31-83)||(40094813-40094865)
chr7 (31-78)||(7517647-7517694)
chr7 (35-82)||(30244341-30244388)
chr7 (32-83)||(30253560-30253611)
chr7 (31-81)||(6054627-6054677)
chr7 (30-72)||(21619095-21619137)
chr7 (14-72)||(27391819-27391877)
chr7 (31-72)||(22566712-22566753)
chr7 (31-80)||(37533406-37533455)
chr7 (34-82)||(7554095-7554143)
chr7 (31-83)||(24177502-24177554)
chr7 (31-83)||(40230330-40230382)
chr7 (31-83)||(45434703-45434755)
chr7 (35-83)||(45754786-45754834)
[»] chr2 (25 HSPs)
chr2 (9-96)||(28226382-28226469)
chr2 (12-104)||(28226703-28226794)
chr2 (15-113)||(13792505-13792601)
chr2 (11-78)||(30219925-30219992)
chr2 (31-83)||(962665-962717)
chr2 (31-83)||(6422177-6422229)
chr2 (31-83)||(15511534-15511586)
chr2 (31-83)||(36178644-36178696)
chr2 (31-82)||(33561491-33561542)
chr2 (33-83)||(23346305-23346355)
chr2 (30-83)||(29676974-29677027)
chr2 (31-83)||(5542664-5542716)
chr2 (31-83)||(14745333-14745385)
chr2 (31-83)||(14745706-14745758)
chr2 (31-83)||(15880330-15880382)
chr2 (31-83)||(41283514-41283566)
chr2 (31-82)||(6421798-6421849)
chr2 (31-82)||(28254277-28254328)
chr2 (9-131)||(35448608-35448728)
chr2 (11-59)||(19548191-19548239)
chr2 (15-82)||(22062834-22062899)
chr2 (31-75)||(31468797-31468841)
chr2 (35-71)||(36178320-36178356)
chr2 (31-83)||(37105991-37106043)
chr2 (31-83)||(37106255-37106307)
[»] chr4 (40 HSPs)
chr4 (9-132)||(11197271-11197394)
chr4 (9-126)||(922463-922580)
chr4 (11-104)||(10396178-10396271)
chr4 (11-82)||(10396463-10396534)
chr4 (31-83)||(54017632-54017684)
chr4 (9-127)||(11196977-11197099)
chr4 (31-83)||(18932786-18932838)
chr4 (31-83)||(50002493-50002545)
chr4 (31-83)||(50630792-50630844)
chr4 (36-83)||(16888853-16888900)
chr4 (31-82)||(54936263-54936314)
chr4 (33-83)||(44620422-44620472)
chr4 (34-83)||(25483406-25483455)
chr4 (15-71)||(1868102-1868158)
chr4 (31-83)||(22028406-22028458)
chr4 (9-104)||(34946416-34946518)
chr4 (34-82)||(36608699-36608747)
chr4 (31-83)||(36629304-36629356)
chr4 (31-83)||(45496872-45496924)
chr4 (31-83)||(49302973-49303025)
chr4 (35-83)||(50459792-50459840)
chr4 (31-83)||(55933161-55933213)
chr4 (36-127)||(2917172-2917263)
chr4 (35-82)||(15841406-15841453)
chr4 (32-83)||(20826285-20826336)
chr4 (9-104)||(34946129-34946224)
chr4 (11-82)||(53468038-53468108)
chr4 (32-82)||(41707503-41707552)
chr4 (11-99)||(2917434-2917525)
chr4 (31-72)||(54017750-54017791)
chr4 (31-83)||(1731684-1731736)
chr4 (31-83)||(3340874-3340926)
chr4 (35-83)||(4955354-4955402)
chr4 (35-83)||(23817718-23817766)
chr4 (35-83)||(32941160-32941208)
chr4 (31-83)||(41370424-41370476)
chr4 (35-83)||(44621073-44621121)
chr4 (31-83)||(49880227-49880279)
chr4 (16-72)||(51681590-51681646)
chr4 (31-83)||(54108980-54109031)
[»] chr5 (24 HSPs)
chr5 (15-112)||(13042305-13042402)
chr5 (15-112)||(13112299-13112396)
chr5 (12-117)||(13043044-13043149)
chr5 (12-117)||(13113040-13113145)
chr5 (15-82)||(13042590-13042657)
chr5 (15-78)||(13112588-13112651)
chr5 (43-105)||(36389297-36389359)
chr5 (31-82)||(26074679-26074730)
chr5 (29-82)||(35150071-35150124)
chr5 (31-83)||(9498693-9498745)
chr5 (31-83)||(32487460-32487512)
chr5 (31-83)||(40296354-40296406)
chr5 (31-82)||(26074186-26074237)
chr5 (31-82)||(36522277-36522328)
chr5 (37-83)||(6500523-6500569)
chr5 (30-83)||(3295054-3295107)
chr5 (34-83)||(11417016-11417065)
chr5 (31-72)||(18603170-18603211)
chr5 (30-83)||(34753064-34753117)
chr5 (25-82)||(36389016-36389073)
chr5 (31-72)||(41170701-41170742)
chr5 (31-83)||(3295384-3295435)
chr5 (31-83)||(6500889-6500941)
chr5 (31-83)||(25328002-25328054)
[»] chr3 (31 HSPs)
chr3 (9-113)||(48127824-48127928)
chr3 (11-82)||(53596007-53596078)
chr3 (11-82)||(53596322-53596393)
chr3 (28-104)||(53596539-53596615)
chr3 (31-83)||(12114601-12114653)
chr3 (29-83)||(52634740-52634794)
chr3 (14-80)||(54017590-54017656)
chr3 (31-80)||(39389137-39389186)
chr3 (31-83)||(29644941-29644993)
chr3 (31-83)||(32589770-32589822)
chr3 (31-83)||(42342427-42342479)
chr3 (16-71)||(16871010-16871065)
chr3 (32-83)||(29644620-29644671)
chr3 (11-71)||(16143485-16143545)
chr3 (31-83)||(22303698-22303750)
chr3 (31-83)||(22303994-22304046)
chr3 (31-83)||(22304636-22304688)
chr3 (34-82)||(45395693-45395741)
chr3 (33-80)||(3135496-3135543)
chr3 (15-70)||(17735043-17735098)
chr3 (15-70)||(19036312-19036367)
chr3 (32-83)||(43346830-43346881)
chr3 (31-86)||(49336723-49336778)
chr3 (14-72)||(17731954-17732012)
chr3 (14-72)||(19033185-19033243)
chr3 (30-83)||(32462939-32462992)
chr3 (34-83)||(39934994-39935043)
chr3 (9-38)||(40195904-40195933)
chr3 (17-82)||(47964558-47964623)
chr3 (31-83)||(35946589-35946641)
chr3 (35-83)||(37990678-37990726)
[»] chr6 (18 HSPs)
chr6 (12-111)||(11638024-11638123)
chr6 (16-83)||(11637760-11637827)
chr6 (31-83)||(3415525-3415577)
chr6 (14-72)||(22605305-22605363)
chr6 (34-83)||(3058296-3058345)
chr6 (31-83)||(2377821-2377873)
chr6 (31-83)||(2378193-2378245)
chr6 (31-83)||(3409326-3409378)
chr6 (35-83)||(16107749-16107797)
chr6 (31-83)||(29518570-29518622)
chr6 (31-83)||(29518987-29519039)
chr6 (31-83)||(32741246-32741298)
chr6 (31-82)||(10074031-10074082)
chr6 (31-82)||(10074403-10074454)
chr6 (31-80)||(2578485-2578534)
chr6 (15-72)||(21130107-21130164)
chr6 (31-83)||(16454974-16455026)
chr6 (31-83)||(26544116-26544168)
[»] chr8 (23 HSPs)
chr8 (9-103)||(3670818-3670912)
chr8 (9-99)||(3671164-3671254)
chr8 (31-80)||(9483229-9483278)
chr8 (12-113)||(18829851-18829952)
chr8 (33-83)||(30441154-30441204)
chr8 (35-76)||(12156704-12156745)
chr8 (31-84)||(30359338-30359391)
chr8 (31-83)||(70313-70365)
chr8 (31-83)||(5915934-5915986)
chr8 (31-83)||(6876901-6876953)
chr8 (32-83)||(147888-147939)
chr8 (32-83)||(45122096-45122147)
chr8 (9-59)||(5981797-5981846)
chr8 (31-72)||(3038340-3038381)
chr8 (35-83)||(3669758-3669806)
chr8 (31-83)||(3670127-3670179)
chr8 (31-83)||(8918803-8918855)
chr8 (31-83)||(33113406-33113458)
chr8 (35-83)||(34834947-34834995)
chr8 (31-83)||(40518138-40518190)
chr8 (31-83)||(40518649-40518701)
chr8 (39-83)||(40579308-40579352)
chr8 (31-83)||(45122691-45122743)
[»] chr1 (21 HSPs)
chr1 (19-83)||(26661937-26662001)
chr1 (31-83)||(32594755-32594807)
chr1 (31-83)||(44043811-44043863)
chr1 (31-82)||(17294644-17294695)
chr1 (16-117)||(31973340-31973441)
chr1 (9-56)||(26231565-26231612)
chr1 (31-82)||(26661562-26661613)
chr1 (31-82)||(34364992-34365043)
chr1 (37-83)||(9955982-9956028)
chr1 (37-83)||(9956212-9956258)
chr1 (30-83)||(14318933-14318986)
chr1 (37-82)||(34364580-34364625)
chr1 (34-83)||(37556181-37556230)
chr1 (34-83)||(41759553-41759602)
chr1 (34-83)||(50051727-50051776)
chr1 (31-83)||(3537638-3537690)
chr1 (35-83)||(3550791-3550839)
chr1 (35-83)||(11977351-11977399)
chr1 (31-83)||(32168737-32168789)
chr1 (31-83)||(44290497-44290549)
chr1 (31-83)||(50052062-50052114)
[»] scaffold0391 (2 HSPs)
scaffold0391 (31-82)||(1731-1782)
scaffold0391 (35-83)||(1145-1193)
[»] scaffold0702 (1 HSPs)
scaffold0702 (31-83)||(553-605)
[»] scaffold0078 (2 HSPs)
scaffold0078 (30-82)||(5048-5100)
scaffold0078 (31-83)||(5424-5476)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 79 - 328
Target Start/End: Original strand, 27598157 - 27598406
Alignment:
Q  79 ctctttttgtgggtcctagacgtttaatccattgctgcttcgaacgctctccaatagttacaaaaatggagtttaatgtttttaaagaagtgcagtggta 178  Q
    |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27598157 ctctctttgtgggtcctagacgtttaacccattgccgcttcgaacgctctccaatagttacaaaaatggagtttaatgtttttaaagaagtgaagtggta 27598256  T
Q  179 tttttatattttagaataacaaataaagtagaaaatatataacaaaaacatgaatgaaaaggaccctaatctttttgctacttgtctcttatgcttatgt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27598257 tttttatattttagaataacaaataaagtagaaaatatataacaaaaacatgaatgaaaaggaccctaatctttttgctacttgtctcttatgcttatgt 27598356  T
Q  279 tagtgtcttttatttctctattttcaatttacactttatatggtatttat 328  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27598357 tagtgtcttttatttctctattttcaatttacgctttatatggtatttat 27598406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 21416251 - 21416150
Alignment:
Q  12 ttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccatt 111  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| || | |||||||||| ||||| ||||||    
T  21416251 ttggatatataagagaggagacccataaacccattgccttagggttttgggtaagagtgtggtgtctctctcttagcgggtcctagatgtttagtccatt 21416152  T
Q  112 gc 113  Q
    ||    
T  21416151 gc 21416150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 23569113 - 23569020
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgttta 104  Q
    ||||||||||||| ||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  23569113 gttggatatataaaagaggaggcccataaacccattgccttaaggttttgggtaagagtgtgatgtctctcatttagtgggtcctagacgttta 23569020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 27598030 - 27598092
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgt 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  27598030 acgttggatatataagagaggagacccataaacccattgtcttagggttttgcgtaagagtgt 27598092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 21416542 - 21416441
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccat 110  Q
    ||||| |||||||||| |||||||||||||| | ||||||| ||||||| ||||||| |||| ||||||||| || | |||||||||| ||| || ||||    
T  21416542 gttggttatataagagcggagacccataaactcgttgtctttgggttttgggtaagaatgtggtgtctctctcttagcgggtcctagatgttcaacccat 21416443  T
Q  111 tg 112  Q
    ||    
T  21416442 tg 21416441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 14681579 - 14681627
Alignment:
Q  33 cccataaacccattgtcttagggttttaggtaagagtgtgatgtctctc 81  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  14681579 cccataaacccattgtcttaaggttttgggtaagagtgtggtgtctctc 14681627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 34218121 - 34218074
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||||||||||||||||| |||||| |||||||||||| |||||||||    
T  34218121 cataaacccattgtcttaaggttttgggtaagagtgtggtgtctctct 34218074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 48071436 - 48071498
Alignment:
Q  14 ggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgt 76  Q
    ||||||||||||||||  || |||||||| ||||||||| |||||| | ||||||||||||||    
T  48071436 ggatatataagagagggaactcataaacctattgtcttaaggttttggataagagtgtgatgt 48071498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 9901713 - 9901762
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||| |||||||||| |||||| |||||||||||| ||||||||||    
T  9901713 ccataaactcattgtcttaaggttttgggtaagagtgtggtgtctctctt 9901762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 24838789 - 24838740
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||| |||||||| |||||| ||||||||||||| |||||||||    
T  24838789 ccataaacccgttgtcttaaggttttgggtaagagtgtgacgtctctctt 24838740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 23468 - 23416
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| |||| |||| |||||| |||||||||||| ||||||||||    
T  23468 gacccataaacctattgccttaaggttttgggtaagagtgtggtgtctctctt 23416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 1085707 - 1085655
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| ||||||||||||  |||||||||    
T  1085707 gacccataaacccattgccttaaggttttgggtaagagtgtggcgtctctctt 1085655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 16569263 - 16569315
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||| | ||||||||||    
T  16569263 gacccataaacccattgccttaaggtttttggtaagagtgcggtgtctctctt 16569315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 16596399 - 16596347
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||| | ||||||||||    
T  16596399 gacccataaacccattgccttaaggtttttggtaagagtgcggtgtctctctt 16596347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 22567130 - 22567078
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  22567130 gacccataaactcattgccttaaggtttttggtaagagtgtggtgtctctctt 22567078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 29157632 - 29157684
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||| |||||| |||| |||||| |||||||||||| ||||||||||    
T  29157632 gacccataaatccattgccttaaggttttgggtaagagtgtggtgtctctctt 29157684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 30245144 - 30245196
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  30245144 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 30245196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 40094865 - 40094813
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||| |||||| |||||| ||||||||||||  |||||||||    
T  40094865 gacccataaacccatcgtcttaaggttttgggtaagagtgtggcgtctctctt 40094813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 7517647 - 7517694
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtct 78  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||||    
T  7517647 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtct 7517694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 30244341 - 30244388
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||| |||| |||||| |||||||||||| |||||||||    
T  30244341 cataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 30244388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 30253560 - 30253611
Alignment:
Q  32 acccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  30253560 acccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 30253611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 6054627 - 6054677
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctc 81  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| ||||||||    
T  6054627 gacccataaacacattgccttaaggttttgggtaagagtgtggtgtctctc 6054677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 21619137 - 21619095
Alignment:
Q  30 agacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||    
T  21619137 agacccataaacccattgtcttaaggttttgggtaaaagtgtg 21619095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 27391877 - 27391819
Alignment:
Q  14 ggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    |||||||||||| | || ||||||||| ||| || |||| |||||||||||||||||||    
T  27391877 ggatatataagacatgaaacccataaatccactgccttaaggttttaggtaagagtgtg 27391819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 22566753 - 22566712
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  22566753 gacccataaacccattgccttaaggttttgggtaagagtgtg 22566712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 37533455 - 37533406
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctct 80  Q
    |||||||||| |||||| |||| |||||| |||||||||||| |||||||    
T  37533455 gacccataaatccattgccttaaggttttgggtaagagtgtggtgtctct 37533406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 7554095 - 7554143
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||||||||||| | |||| |||||| |||||||||||| |||||||||    
T  7554095 ccataaacccatagccttaaggttttgggtaagagtgtggtgtctctct 7554143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 24177502 - 24177554
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| ||||  ||||| ||||||||||||  |||||||||    
T  24177502 gacccataaacccattgccttaaagtttttggtaagagtgtggcgtctctctt 24177554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 40230382 - 40230330
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||| |||||| |||||| ||||| ||| || ||||||||||    
T  40230382 gacccataaacccatagtcttaaggttttgggtaaaagtctggtgtctctctt 40230330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 45434703 - 45434755
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||  | || |||| |||||| |||||||||||||||||||||||    
T  45434703 gacccataaacttactgccttaaggttttgggtaagagtgtgatgtctctctt 45434755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 45754786 - 45754834
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| | |||| |||||| |||||||||||| ||||||||||    
T  45754786 cataaacccatagccttaaggttttgggtaagagtgtggtgtctctctt 45754834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 28226382 - 28226469
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtccta 96  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||  |||||||    
T  28226382 acgttggatatataagagaggagacccataaacacattgtcttagggttttaggtaagagtgtggtgtctctctctttgcaggtccta 28226469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 28226703 - 28226794
Alignment:
Q  12 ttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgttta 104  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||||||| |||  || |||||||||||||    
T  28226703 ttggatatataagagaggagactcataaacccattgtctta-ggtttttggtaagagtgtggtgtctctctctttacggatcctagacgttta 28226794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 13792601 - 13792505
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccattgc 113  Q
    ||||||||||||||||||||| || |||||||| |||  |||||| ||||||||||||||||  ||||||| | |||||||||| ||||| ||| ||||    
T  13792601 gatatataagagaggagacccgtacacccattgacttgaggttttgggtaagagtgtgatgt--ctcttttagcgggtcctagatgtttagtcccttgc 13792505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 30219992 - 30219925
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtct 78  Q
    ||||||||  |||||||||||||||||||||| ||||||||||||||||  ||| ||||||| |||||    
T  30219992 gttggatacttaagagaggagacccataaaccaattgtcttagggttttgtgtaggagtgtggtgtct 30219925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 962665 - 962717
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||||||||||| |||||| |||||||||||| |||| |||||    
T  962665 gacccataaacccattgtcttaaggttttgggtaagagtgtgttgtcactctt 962717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 6422177 - 6422229
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||| | |||| ||||||||||||||||||| ||||||||||    
T  6422177 gacccataaacccatagccttaaggttttaggtaagagtgtggtgtctctctt 6422229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 15511586 - 15511534
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||||||||||| | |||| |||||||||||| ||||||||||    
T  15511586 gacccataaacccattgtcttaagattttgggtaagagtgtggtgtctctctt 15511534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 36178696 - 36178644
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  36178696 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 36178644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 33561542 - 33561491
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||| |||||||||| |||||| |||||||||||||| |||||||    
T  33561542 gacccataaactcattgtcttaaggttttgggtaagagtgtgatatctctct 33561491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 23346305 - 23346355
Alignment:
Q  33 cccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||| | |||| |||||| |||||||||||||||||||||||    
T  23346305 cccataaacccatagccttaaggttttcggtaagagtgtgatgtctctctt 23346355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 29676974 - 29677027
Alignment:
Q  30 agacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||||||| |||| || |||| ||||||||||| ||||||||||    
T  29676974 agacccataaacccattgccttaaggctttaagtaagagtgtggtgtctctctt 29677027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 5542716 - 5542664
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| |||| |||| |||||| |||||||||||| ||||||||||    
T  5542716 gacccataaacctattgccttaaggtttttggtaagagtgtggtgtctctctt 5542664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 14745385 - 14745333
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| ||||||||||||  |||||||||    
T  14745385 gacccataaacccattgccttaaggttttgggtaagagtgtggcgtctctctt 14745333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 14745758 - 14745706
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| ||||||||||||  |||||||||    
T  14745758 gacccataaacccattgccttaaggttttgggtaagagtgtggcgtctctctt 14745706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 15880330 - 15880382
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| ||||||||||||  |||||||||    
T  15880330 gacccataaacccattgccttaaggttttgggtaagagtgtggcgtctctctt 15880382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 41283566 - 41283514
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| |||||||||||||||||||  |||||||||    
T  41283566 gacccataaactcattgccttaaggttttaggtaagagtgtggcgtctctctt 41283514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 6421798 - 6421849
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||||||||||| |||| |||| |||||| |||||||||||| |||||||||    
T  6421798 gacccataaacctattgccttaaggttttgggtaagagtgtggtgtctctct 6421849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 28254328 - 28254277
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  28254328 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctct 28254277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 35448728 - 35448608
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatcc 108  Q
    ||||| |||||||||||||||||||| |||||   |||| ||||| ||||| | |||||||| | ||||||||  || |||| || |||||||||| ||     
T  35448728 acgtttgatatataagagaggagacctataaattaattgccttagagtttttgttaagagtgcggtgtctctc--ttagtggatcttagacgtttagtct 35448631  T
Q  109 attgctgcttcgaacgctctcca 131  Q
    ||||| ||| | | |||||||||    
T  35448630 attgccgctccaagcgctctcca 35448608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 19548191 - 19548239
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggtttt 59  Q
    |||||||||||||||||||||||||||| | | | ||||||| ||||||    
T  19548191 gttggatatataagagaggagacccatatatctaatgtcttaaggtttt 19548239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 22062899 - 22062834
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||||||||||||  ||||||||||||  ||||| ||| |||||| |||||||||||| ||| |||||    
T  22062899 gatatataagaga--agacccataaacttattgttttatggttttgggtaagagtgtggtgtttctct 22062834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 31468841 - 31468797
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatg 75  Q
    ||||||||||| ||||| |||| |||||| |||||||||||||||    
T  31468841 gacccataaactcattgccttaaggttttgggtaagagtgtgatg 31468797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 36178356 - 36178320
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgt 71  Q
    |||||||||||||||||| |||||| |||||||||||    
T  36178356 cataaacccattgtcttaaggttttgggtaagagtgt 36178320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 37105991 - 37106043
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| | |||| |||||||||||| ||||||||||    
T  37105991 gacccataaactcattgccttaagattttgggtaagagtgtggtgtctctctt 37106043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 37106255 - 37106307
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||  |||| |||||| |||||||||||| ||| ||||||    
T  37106255 gacccataaacccatttccttaaggttttgggtaagagtgtggtgtttctctt 37106307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 11197271 - 11197394
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatcc 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| || |  ||||||||  |||||  ||    
T  11197271 acgttggatatataagagaggagacccataaacccattgccttagggttttgggtaagagtgtggtgtctctctcttagctggtcctaggtgtttagccc 11197370  T
Q  109 attgctgcttcgaacgctctccaa 132  Q
    ||||| ||| | ||||||| ||||    
T  11197371 attgccgctccaaacgctccccaa 11197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 922463 - 922580
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatcc 108  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||| |||||||||||| | || ||||||||||||||  |    
T  922463 acgttagatatagaagagaggagacccataaacccattgtcttaggggtttggataagagtgtggtgtctctcttttagcggatcctagacgtttaagtc 922562  T
Q  109 attgctgcttcgaacgct 126  Q
    ||||| ||| | ||||||    
T  922563 attgccgctccaaacgct 922580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 10396178 - 10396271
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgttta 104  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||| || | ||||| ||||||||||    
T  10396178 gttgaatatataagagagaagacccataaacccattgccttagggttttaggtaagagggtggtgtctctctcttagcgggtcatagacgttta 10396271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 10396463 - 10396534
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| | |||||||    
T  10396463 gttggatatataagagaggagacccataaacccattgccttagggttttggataagagtgtggtctctctct 10396534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 54017684 - 54017632
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  54017684 gacccataaacccattgccttaaggttttaggtaagagtgtgatgtctctctt 54017632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 11196977 - 11197099
Alignment:
Q  9 acgttggatatata----agagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgttta 104  Q
    ||||||||||||||    ||||||||||||| ||||||||||| |||||| ||||||||||||||| | ||||||||| || |  ||||||||  |||||    
T  11196977 acgttggatatatataagagagaggagacccttaaacccattgccttaggattttaggtaagagtgaggtgtctctctcttagctggtcctaggtgttta 11197076  T
Q  105 atccattgctgcttcgaacgctc 127  Q
      ||||||| ||| | |||||||    
T  11197077 gcccattgccgctccaaacgctc 11197099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 18932838 - 18932786
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||||||||    
T  18932838 gacccataaacccattgccttaaggttttaggtaagagtgtggtgtctctctt 18932786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 50002493 - 50002545
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||| ||||||||||| |||||| |||||||||||| ||||||||||    
T  50002493 gacccataaatccattgtcttaaggttttgggtaagagtgtggtgtctctctt 50002545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 50630844 - 50630792
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  50630844 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 50630792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 16888900 - 16888853
Alignment:
Q  36 ataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||    
T  16888900 ataaactcattgtcttacggttttgggtaagagtgtgatgtctctctt 16888853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 54936263 - 54936314
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||||||||    
T  54936263 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 54936314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 44620422 - 44620472
Alignment:
Q  33 cccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||| |||| |||||| |||||||||||||||| ||||||    
T  44620422 cccataaacccattgccttaaggttttgggtaagagtgtgatgtttctctt 44620472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 25483406 - 25483455
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  25483406 ccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 25483455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 1868102 - 1868158
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgt 71  Q
    |||||||||||||||  |||||||||||||||| ||||  ||||| |||||||||||    
T  1868102 gatatataagagagggaacccataaacccattgccttaaagttttgggtaagagtgt 1868158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 22028458 - 22028406
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||||||||  ||||| |||||||||||| ||||||||||    
T  22028458 gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtctctctt 22028406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 34946518 - 34946416
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggt-------tttaggtaagagtgtgatgtctctctttttgtgggtcctagacgt 101  Q
    ||||||||||| ||||||| ||||||||||||||   |||||||||||       ||| || ||||||||  ||||||||| || |||||||||||||||    
T  34946518 acgttggatatttaagagaagagacccataaacctgatgtcttagggttttggtcttttgggaagagtgtagtgtctctctcttagtgggtcctagacgt 34946419  T
Q  102 tta 104  Q
    |||    
T  34946418 tta 34946416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 36608747 - 36608699
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||| ||||||||||| |||||| |||||||||||| |||||||||    
T  36608747 ccataaatccattgtcttaaggttttgggtaagagtgtggtgtctctct 36608699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 36629304 - 36629356
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  36629304 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 36629356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 45496872 - 45496924
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||| |||||| |||||||||| |||||| |||||||||||| ||||||||||    
T  45496872 gacctataaactcattgtcttaaggttttgggtaagagtgtggtgtctctctt 45496924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 49302973 - 49303025
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||| ||||||    
T  49302973 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtatctctt 49303025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 50459792 - 50459840
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||||    
T  50459792 cataaacccattatcttaaggttttaggtaagagcgtggtgtctctctt 50459840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 55933213 - 55933161
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| ||||  ||||| |||||||||||| ||||||||||    
T  55933213 gacccataaacccattgccttaaagttttgggtaagagtgtggtgtctctctt 55933161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 2917263 - 2917172
Alignment:
Q  36 ataaacccattgtctta--gggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccattgctgcttcgaacgctc 127  Q
    |||||| ||||||||||  ||||||| ||||||||||||| |||| ||||   ||| ||||||||||||||| ||||||| ||| | |||||||    
T  2917263 ataaactcattgtcttatagggttttgggtaagagtgtgacgtctttctta--gtgagtcctagacgtttaacccattgccgctcccaacgctc 2917172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 15841453 - 15841406
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||| ||||| |||| |||||| ||||||||||||||||||||||    
T  15841453 cataaacacattgccttaaggttttgggtaagagtgtgatgtctctct 15841406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 20826285 - 20826336
Alignment:
Q  32 acccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| | ||||   ||||||||||||||||||||||||||||    
T  20826285 acccataaacccatagccttaacattttaggtaagagtgtgatgtctctctt 20826336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 34946224 - 34946129
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgttta 104  Q
    |||||| |||| |||| |||||||| | ||||||   || |||||| |||| |||||||||||| ||||||||| || |  |||||||||||||||    
T  34946224 acgttgaatatttaagggaggagactcgtaaacctcatgccttaggattttgggtaagagtgtggtgtctctctcttagaaggtcctagacgttta 34946129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 53468108 - 53468038
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||| |||||||| ||||||||||||||||| |||||| ||| | |||| | |||| |||||||||||||||    
T  53468108 gttgaatatataa-agaggagacccataaactcattgttttaagcttttggataagtgtgtgatgtctctct 53468038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 41707552 - 41707503
Alignment:
Q  32 acccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||||||||| |||||||||| |||||| |||||||||||| |||||||||    
T  41707552 acccataaactcattgtcttaaggtttt-ggtaagagtgtggtgtctctct 41707503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 2917525 - 2917434
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgt---gatgtctctctttttgtgggtcctagac 99  Q
    |||| ||||| |||||| ||||| |||||| ||| | |||||||||||| | |||||||||   ||||||| ||| || |||||||||||||    
T  2917525 gttgaatatacaagagaagagactcataaatccactatcttagggttttggctaagagtgtgatgatgtctttctcttagtgggtcctagac 2917434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 54017791 - 54017750
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    ||||||||  |||||||||||| |||||||||||||||||||    
T  54017791 gacccatattcccattgtcttaaggttttaggtaagagtgtg 54017750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 1731736 - 1731684
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| |||| |||| |||||| |||||||||||| ||| ||||||    
T  1731736 gacccataaaccaattgccttaaggttttgggtaagagtgtggtgtttctctt 1731684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 3340874 - 3340926
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| || |||| |||||| |||||||||||| ||||| ||||    
T  3340874 gacccataaacccactgccttaaggttttgggtaagagtgtggtgtctttctt 3340926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 4955402 - 4955354
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||| |||| |||||| ||||||||||||  |||||||||    
T  4955402 cataaacccattgccttaaggttttgggtaagagtgtggcgtctctctt 4955354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 23817766 - 23817718
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  23817766 cataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 23817718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 32941208 - 32941160
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||| ||||| |||| |||||| ||||||||||||| |||||||||    
T  32941208 cataaactcattgccttaaggttttgggtaagagtgtgacgtctctctt 32941160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 41370424 - 41370476
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| ||||  ||||| |||||||||||  ||||||||||    
T  41370424 gacccataaacccattgccttaaagttttgggtaagagtgtagtgtctctctt 41370476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 44621073 - 44621121
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||| |||||||||| |||||| |||||||||||| ||| ||||||    
T  44621073 cataaactcattgtcttaaggttttgggtaagagtgtggtgtttctctt 44621121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 49880227 - 49880279
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| || |||| |||||| |||||||| ||| ||||||||||    
T  49880227 gacccataaacccactgccttaaggttttgggtaagagcgtggtgtctctctt 49880279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 51681590 - 51681646
Alignment:
Q  16 atatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    |||||||||||||| ||| |||| |||||||| |||| | |||| ||||||||||||    
T  51681590 atatataagagaggggactcatatacccattgccttaagattttgggtaagagtgtg 51681646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 54108980 - 54109031
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| | |||| |||||||||||| ||||||||||    
T  54108980 gacccataaacccattgccttaag-ttttgggtaagagtgtggtgtctctctt 54109031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 13042305 - 13042402
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccattg 112  Q
    |||||||||| ||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||| || | ||||||||||||||||| ||||||    
T  13042305 gatatataagtgaggagacccaaaaacccatcgtcttagagtttttggtaagagtgtgatgtctctctcttagcgggtcctagacgtttaacccattg 13042402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 13112299 - 13112396
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccattg 112  Q
    |||||||||| ||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||| || | ||||||||||||||||| ||||||    
T  13112299 gatatataagtgaggagacccaaaaacccatcgtcttagagtttttggtaagagtgtgatgtctctctcttagcgggtcctagacgtttaacccattg 13112396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 13043044 - 13043149
Alignment:
Q  12 ttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccatt 111  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||| ||||||||  || ||||||||| || |  |||||||||| ||||  |||||    
T  13043044 ttggatatataagagaggagacccataaacccatcatcttaggattttgggtaagagattggtgtctctctcttagcaggtcctagacatttagcccatt 13043143  T
Q  112 gctgct 117  Q
    ||||||    
T  13043144 gctgct 13043149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 13113040 - 13113145
Alignment:
Q  12 ttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccatt 111  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||| ||||||||  || ||||||||| || |  |||||||||| ||||  |||||    
T  13113040 ttggatatataagagaggagacccataaacccatcatcttaggattttgggtaagagattggtgtctctctcttagcaggtcctagacatttagcccatt 13113139  T
Q  112 gctgct 117  Q
    ||||||    
T  13113140 gctgct 13113145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 13042590 - 13042657
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| | |||||||||| |||||||||    
T  13042590 gatatataagagaggagacccataaacccattgccttaaggttttggataagagtgtggtgtctctct 13042657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 13112588 - 13112651
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtct 78  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |||||    
T  13112588 gatatataagagaggagacccataaacccattgtcttaaggttttggataagagtgtggtgtct 13112651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 36389359 - 36389297
Alignment:
Q  43 cattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaa 105  Q
    ||||| ||||||||||| |||||  |||||||||||||||||| ||||||||| |||||||||    
T  36389359 cattgccttagggttttgggtaacggtgtgatgtctctcttttagtgggtcctggacgtttaa 36389297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 26074679 - 26074730
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||||||||    
T  26074679 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 26074730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 35150071 - 35150124
Alignment:
Q  29 gagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||||||||||| ||||||||||| |||||| ||||| |||||| |||||||||    
T  35150071 gagacccataaatccattgtcttaaggttttgggtaaaagtgtggtgtctctct 35150124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 9498745 - 9498693
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| | |||| |||||||||||| ||||||||||    
T  9498745 gacccataaacccattgccttaagattttgggtaagagtgtggtgtctctctt 9498693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 32487460 - 32487512
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| ||||||||||||| || ||||||    
T  32487460 gacccataaacccattgccttaaggttttgggtaagagtgtgacgtatctctt 32487512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 40296406 - 40296354
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||  |||||| |||||||||||| ||||||||||    
T  40296406 gacccataaacccattgccttgaggttttgggtaagagtgtggtgtctctctt 40296354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 26074237 - 26074186
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||| ||||||||| |||| |||||| |||||||||||| |||||||||    
T  26074237 gacccatgaacccattgccttaaggttttgggtaagagtgtggtgtctctct 26074186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 36522328 - 36522277
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||| ||||||||||| ||||| |||||| |||||||||||| |||||||||    
T  36522328 gaccaataaacccattatcttaaggttttgggtaagagtgtggtgtctctct 36522277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 6500523 - 6500569
Alignment:
Q  37 taaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  6500523 taaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 6500569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 3295107 - 3295054
Alignment:
Q  30 agacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||||||| |||  |||||| |||| ||||||| ||||||||||    
T  3295107 agacccataaacccattgccttgaggttttgggtatgagtgtggtgtctctctt 3295054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 11417065 - 11417016
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| |||| ||||||  ||||||||||||| ||||||||    
T  11417065 ccataaacccattgccttaaggttttgtgtaagagtgtgatctctctctt 11417016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 18603211 - 18603170
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  18603211 gacccataaacccattgccttaaggttttgggtaagagtgtg 18603170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 34753117 - 34753064
Alignment:
Q  30 agacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||| |||| |||| |||||| ||||||||||||  |||||||||    
T  34753117 agacccataaaccgattgccttaaggttttgggtaagagtgtggcgtctctctt 34753064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 36389073 - 36389016
Alignment:
Q  25 agaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||| || || ||||||||||| ||| |||||||| ||| |||||    
T  36389073 agaggagacccataaactcagtgccttagggttttgggtcagagtgtggtgtttctct 36389016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 41170701 - 41170742
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  41170701 gacccataaacccattgccttaaggttttgggtaagagtgtg 41170742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 3295435 - 3295384
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| |||| |||| |||||| |||||||||||| ||||||||||    
T  3295435 gacccataaaccaattgccttaaggtttt-ggtaagagtgtgttgtctctctt 3295384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 6500889 - 6500941
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| |||||| | |||||||||| ||||||||||    
T  6500889 gacccataaactcattgccttaaggttttggataagagtgtggtgtctctctt 6500941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 25328002 - 25328054
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| | || |||| |||||| |||||||||||| ||||||||||    
T  25328002 gacccataaacctaatgccttaaggttttgggtaagagtgtggtgtctctctt 25328054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 48127928 - 48127824
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatcc 108  Q
    ||||| |||||||||||||||||||||||||||||||||  |||  ||||| | |||||||||| ||||| ||| || |  ||||||||||||||| |||    
T  48127928 acgtttgatatataagagaggagacccataaacccattgctttaatgttttggataagagtgtggtgtctttctcttagatggtcctagacgtttagtcc 48127829  T
Q  109 attgc 113  Q
    |||||    
T  48127828 attgc 48127824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 53596007 - 53596078
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||||||||||||||||||| ||  |||| |||||| |||||||||||| |||||||||    
T  53596007 gttggatatataagagaggagacccataaacccgttaccttaaggttttgggtaagagtgtggtgtctctct 53596078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 53596322 - 53596393
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||||||||||||||||||| ||  |||| |||||| |||||||||||| |||||||||    
T  53596322 gttggatatataagagaggagacccataaacccgttaccttaaggttttgggtaagagtgtggtgtctctct 53596393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 53596539 - 53596615
Alignment:
Q  28 ggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgttta 104  Q
    |||||||||||||||||||| |||| | ||||||||||||||||| |||||||||  | | ||||||||||||||||    
T  53596539 ggagacccataaacccattgacttaagattttaggtaagagtgtggtgtctctctcatagcgggtcctagacgttta 53596615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 12114653 - 12114601
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||||||||||| |||||| |||||||||||| ||||||||||    
T  12114653 gacccataaacccattgtcttaaggttttgggtaagagtgtggtgtctctctt 12114601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 52634740 - 52634794
Alignment:
Q  29 gagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||    
T  52634740 gagacccataaacccattgccttaaggttttgggtaagagtgtgacgtctctctt 52634794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 54017656 - 54017590
Alignment:
Q  14 ggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctct 80  Q
    ||||||||||||||||  | |||||||||||||| |||| |||||| |||||||||||| |||||||    
T  54017656 ggatatataagagagggaatccataaacccattgccttaaggttttgggtaagagtgtggtgtctct 54017590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 39389137 - 39389186
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctct 80  Q
    |||||||||||||||||||||| |||||| |||||||||||| |||||||    
T  39389137 gacccataaacccattgtcttaaggttttgggtaagagtgtggtgtctct 39389186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 29644993 - 29644941
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||||||||||| |||||| ||||||||||||  |||||||||    
T  29644993 gacccataaacccattgtcttaaggttttgggtaagagtgtggcgtctctctt 29644941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 32589770 - 32589822
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||| ||||||||||||    
T  32589770 gacccataaacccattgccttaaggttttgggtaagagtgcgatgtctctctt 32589822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 42342479 - 42342427
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||| ||||||||||| |||||| ||||||||||||| |||||||||    
T  42342479 gacccataaatccattgtcttaaggttttgggtaagagtgtgacgtctctctt 42342427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 16871065 - 16871010
Alignment:
Q  16 atatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgt 71  Q
    ||||||||||||||  |||||||||| ||||| |||| ||||||||||||||||||    
T  16871065 atatataagagagggaacccataaactcattgccttaaggttttaggtaagagtgt 16871010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 29644671 - 29644620
Alignment:
Q  32 acccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||||||| |||||| ||||||||||||  |||||||||    
T  29644671 acccataaacccattgtcttaaggttttgggtaagagtgtggcgtctctctt 29644620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 16143485 - 16143545
Alignment:
Q  11 gttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgt 71  Q
    ||||||||||||||||| ||||||||||| | ||||| ||||  ||||| |||||||||||    
T  16143485 gttggatatataagagacgagacccataagctcattgccttaaagttttgggtaagagtgt 16143545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 22303750 - 22303698
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||| ||||||    
T  22303750 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtttctctt 22303698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 22304046 - 22303994
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| | |||||||||| ||||||||||    
T  22304046 gacccataaacccattgccttaaggttttggataagagtgtggtgtctctctt 22303994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 22304636 - 22304688
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  22304636 gacccataaacacattgccttaaggttttgggtaagagtgtggtgtctctctt 22304688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 45395741 - 45395693
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||||||||||||||||||  ||||| |||||||||||| |||||||||    
T  45395741 ccataaacccattgtcttaatgttttgggtaagagtgtggtgtctctct 45395693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 3135543 - 3135496
Alignment:
Q  33 cccataaacccattgtcttagggttttaggtaagagtgtgatgtctct 80  Q
    ||||||||||||||| |||| |||||||| |||||||||| |||||||    
T  3135543 cccataaacccattgccttaaggttttagataagagtgtggtgtctct 3135496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 17735098 - 17735043
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtg 70  Q
    |||||||||||||||  |||||||||| ||||| |||| |||||| ||||||||||    
T  17735098 gatatataagagagggaacccataaactcattgacttaaggttttgggtaagagtg 17735043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 19036367 - 19036312
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtg 70  Q
    |||||||||||||||  |||||||||| ||||| |||| |||||| ||||||||||    
T  19036367 gatatataagagagggaacccataaactcattgacttaaggttttgggtaagagtg 19036312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 43346881 - 43346830
Alignment:
Q  32 acccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  43346881 acccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 43346830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 49336778 - 49336723
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctcttttt 86  Q
    ||||||||||||||| ||||||  ||| | |||||||||||| |||||||||||||    
T  49336778 gacccataaacccatagtcttaaagttctgggtaagagtgtggtgtctctcttttt 49336723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 17732012 - 17731954
Alignment:
Q  14 ggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    |||||||||||| |||  |||||||||||||||| |||| ||||||  |||||||||||    
T  17732012 ggatatataagaaagggaacccataaacccattgccttaaggttttgagtaagagtgtg 17731954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 19033243 - 19033185
Alignment:
Q  14 ggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    |||||||||||| |||  |||||||||||||||| |||| ||||||  |||||||||||    
T  19033243 ggatatataagaaagggaacccataaacccattgccttaaggttttgagtaagagtgtg 19033185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 32462992 - 32462939
Alignment:
Q  30 agacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||| ||||||||||||| |||| ||||||  ||||||||||| ||||||||||    
T  32462992 agactcataaacccattgccttaaggttttgagtaagagtgtggtgtctctctt 32462939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 39935043 - 39934994
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| ||||  |||||  ||||||||||||||||||||||    
T  39935043 ccataaacccattgccttaaagttttgagtaagagtgtgatgtctctctt 39934994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 40195933 - 40195904
Alignment:
Q  9 acgttggatatataagagaggagacccata 38  Q
    ||||||||||||||||||||||||||||||    
T  40195933 acgttggatatataagagaggagacccata 40195904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 47964623 - 47964558
Alignment:
Q  17 tatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||||||| |||  |||||||||||| |||| |||| |||||| ||||||||||||  ||||||||    
T  47964623 tatataagtgagaggacccataaacctattgccttaaggttttgggtaagagtgtggcgtctctct 47964558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 35946589 - 35946641
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||| ||| |||| |||||| ||||| |||||| ||||||||||    
T  35946589 gacccataaacccgttgccttaaggttttgggtaaaagtgtggtgtctctctt 35946641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 37990726 - 37990678
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  37990726 cataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 37990678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 11638123 - 11638024
Alignment:
Q  12 ttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccatt 111  Q
    ||||||||||||||||| ||| |  || |||||||| |||||| |||| ||||||||| || ||||||||| |||| ||||||||||||||||| |||||    
T  11638123 ttggatatataagagagaagatctgtatacccattgccttaggattttgggtaagagtatggtgtctctctctttgcgggtcctagacgtttaacccatt 11638024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 11637827 - 11637760
Alignment:
Q  16 atatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||| ||||||||||||||||||||| | |||| | |||||||||| ||||||||||    
T  11637827 atatataagagaggatacccataaacccattgtcttaagattttggataagagtgtggtgtctctctt 11637760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 3415525 - 3415577
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  3415525 gacccataaacccattgccttaaggtttttggtaagagtgtggtgtctctctt 3415577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 22605363 - 22605305
Alignment:
Q  14 ggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    ||||||||||||| ||| |||||||||||||||| |||| |||||| ||||||| ||||    
T  22605363 ggatatataagagtggaaacccataaacccattgccttaaggttttgggtaagaatgtg 22605305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 3058296 - 3058345
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  3058296 ccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 3058345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 2377821 - 2377873
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||||| ||||    
T  2377821 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctttctt 2377873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 2378193 - 2378245
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||  |||| |||||||||||||| |||| ||||||||||    
T  2378193 gacccataaacccattaccttaaggttttaggtaagaatgtggtgtctctctt 2378245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 3409326 - 3409378
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  3409326 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 3409378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 16107749 - 16107797
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  16107749 cataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 16107797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 29518570 - 29518622
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||  |||| |||||| |||||||||||| ||||||||||    
T  29518570 gacccataaacccattaccttaaggttttgggtaagagtgtggtgtctctctt 29518622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 29518987 - 29519039
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||  |||| |||||| |||||||||||| ||||||||||    
T  29518987 gacccataaacccattaccttaaggttttgggtaagagtgtggtgtctctctt 29519039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 32741246 - 32741298
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||  |||| |||||| |||||||||||| ||||||||||    
T  32741246 gacccataaacccattaccttaaggttttgggtaagagtgtggtgtctctctt 32741298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 10074082 - 10074031
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||| |||| |||||| ||||| |||||| |||||||||    
T  10074082 gacccataaacccattgccttaaggttttgggtaaaagtgtggtgtctctct 10074031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 10074454 - 10074403
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  10074454 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctct 10074403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 2578534 - 2578485
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctct 80  Q
    ||||||||||||||| | |||| |||||| |||||||||||| |||||||    
T  2578534 gacccataaacccatagccttaaggttttgggtaagagtgtggtgtctct 2578485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 21130164 - 21130107
Alignment:
Q  15 gatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    |||||||||||||||  ||||||||| |||||| |||| |||||| | ||||||||||    
T  21130164 gatatataagagagggaacccataaatccattgccttaaggttttggataagagtgtg 21130107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 16454974 - 16455026
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| |||| |||| |||||| ||||||||||||  |||||||||    
T  16454974 gacccataaacctattgccttaaggttttgggtaagagtgtggcgtctctctt 16455026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 26544116 - 26544168
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||  | |||| ||||||  ||||||||||||||||||||||    
T  26544116 gacccataaacccaccgccttaaggttttgagtaagagtgtgatgtctctctt 26544168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 3670912 - 3670818
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgttt 103  Q
    ||||||||||||||||||| |||||||||||| ||| |  ||||||||||| | ||| | |||| ||||||||| || | ||||| |||||||||    
T  3670912 acgttggatatataagagatgagacccataaatccactaccttagggttttggataataatgtggtgtctctctcttggcgggtcttagacgttt 3670818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 3671254 - 3671164
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagac 99  Q
    |||||||||||||||||||||||| ||||||||| | || ||||||||||| | ||| ||| || ||||||||| || | ||||| |||||    
T  3671254 acgttggatatataagagaggagaaccataaacctactgccttagggttttggataatagtttggtgtctctctcttagcgggtcttagac 3671164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 9483278 - 9483229
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctct 80  Q
    |||||||||||||||||||||| |||||| |||||||||||| |||||||    
T  9483278 gacccataaacccattgtcttaaggttttgggtaagagtgtggtgtctct 9483229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 18829952 - 18829851
Alignment:
Q  12 ttggatatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccatt 111  Q
    |||||||| |||||||| | ||| |||||||||||| |||||| |||| | |||||||||| | ||| ||| || | ||||||||||||||||  |||||    
T  18829952 ttggatatttaagagagtaaacctataaacccattgccttaggattttggataagagtgtggtatctttctcttagcgggtcctagacgtttagcccatt 18829853  T
Q  112 gc 113  Q
    ||    
T  18829852 gc 18829851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 30441154 - 30441204
Alignment:
Q  33 cccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  30441154 cccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 30441204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 12156745 - 12156704
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgt 76  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  12156745 cataaacccattgtcttaaggttttgggtaagagtgtgatgt 12156704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 30359338 - 30359391
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctcttt 84  Q
    ||||||||||||||| | |||| |||||| |||||||||||| |||||||||||    
T  30359338 gacccataaacccatagccttaaggttttgggtaagagtgtggtgtctctcttt 30359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 70365 - 70313
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| || |||| |||||||||||||||||||| |||| ||||    
T  70365 gacccataaacccactgccttaaggttttaggtaagagtgtgacgtctatctt 70313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 5915934 - 5915986
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  5915934 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 5915986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 6876953 - 6876901
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||| || ||||||||||||||||| |||||||||||| ||| ||||||    
T  6876953 gacccatacactcattgtcttagggttttgggtaagagtgtggtgtttctctt 6876901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 147888 - 147939
Alignment:
Q  32 acccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| |||| |||| |||||| |||||||||||| ||||||||||    
T  147888 acccataaacctattgccttaaggttttgggtaagagtgtggtgtctctctt 147939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 45122147 - 45122096
Alignment:
Q  32 acccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||| |||| ||||| |||||| |||||||||||| ||||||||||    
T  45122147 acccataaactcattttcttaaggttttgggtaagagtgtggtgtctctctt 45122096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 5981846 - 5981797
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggtttt 59  Q
    ||||||||||||||||||||| |||||||||| |||||| |||| ||||||    
T  5981846 acgttggatatataagagaggggacccataaa-ccattgccttaaggtttt 5981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 3038381 - 3038340
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtg 72  Q
    ||||||||||||||||| |||| |||||| ||||||||||||    
T  3038381 gacccataaacccattgccttaaggttttgggtaagagtgtg 3038340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 3669758 - 3669806
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  3669758 cataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 3669806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 3670127 - 3670179
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| |||  |||| |||||| |||||||||||| ||||||||||    
T  3670127 gacccataaacctatttccttaaggttttgggtaagagtgtggtgtctctctt 3670179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 8918855 - 8918803
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| |||| |||| |||||| ||||||||||||| |||| ||||    
T  8918855 gacccataaacctattgacttaaggttttgggtaagagtgtgacgtctttctt 8918803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 33113458 - 33113406
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| ||||| |||| | |||| |||||||||||| ||||||||||    
T  33113458 gacccataaactcattgccttaagattttgggtaagagtgtggtgtctctctt 33113406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 34834947 - 34834995
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||| ||||| |||| |||||| |||||||||||| ||||||||||    
T  34834947 cataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 34834995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 40518138 - 40518190
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| || |||| |||||| ||||||||||||  |||||||||    
T  40518138 gacccataaacccaatgccttaaggttttgggtaagagtgtggcgtctctctt 40518190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 40518649 - 40518701
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||| || |||| |||||| ||||||||||||| ||| |||||    
T  40518649 gacccataaacccaatgacttaaggttttgggtaagagtgtgacgtcactctt 40518701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 40579352 - 40579308
Alignment:
Q  39 aacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||| |||||| |||| |||||||||||| ||||||||||    
T  40579352 aacccattgccttaggattttgggtaagagtgtggtgtctctctt 40579308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 45122691 - 45122743
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| |||||||||| |||||| |||| |||||||  |||||||||    
T  45122691 gacccataaactcattgtcttaaggttttgggtatgagtgtggcgtctctctt 45122743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 26662001 - 26661937
Alignment:
Q  19 tataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||| ||| ||||||||||||| |||| |||| |||||| |||||||||||| ||||||||||    
T  26662001 tataagtgagaagacccataaaccgattgccttaaggttttgggtaagagtgtggtgtctctctt 26661937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 32594807 - 32594755
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| |||||||||| |||||| |||||||||||| ||||||||||    
T  32594807 gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtctctctt 32594755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 44043863 - 44043811
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||||||||||||| | |||| |||||||||||| ||||||||||    
T  44043863 gacccataaacccattgtcttaagattttgggtaagagtgtggtgtctctctt 44043811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 17294644 - 17294695
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||||||||    
T  17294644 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 17294695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 31973441 - 31973340
Alignment:
Q  16 atatataagagaggagacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctttttgtgggtcctagacgtttaatccattgctg 115  Q
    ||||||||||||||| || |||| ||||  || |||| | |||| |||||||||||||||||||||| || | || | |||||||||||  ||| |||||    
T  31973441 atatataagagaggatacacatatacccgatgccttaagattttgggtaagagtgtgatgtctctctcttagcggattctagacgtttagcccactgctg 31973342  T
Q  116 ct 117  Q
    ||    
T  31973341 ct 31973340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 26231565 - 26231612
Alignment:
Q  9 acgttggatatataagagaggagacccataaacccattgtcttagggt 56  Q
    ||||||||||| ||||||||||| |||||||| |||| ||||||||||    
T  26231565 acgttggatatttaagagaggaggcccataaaaccatcgtcttagggt 26231612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 26661613 - 26661562
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  26661613 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctct 26661562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 34364992 - 34365043
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||| | |||| |||||| |||||||||||| |||||||||    
T  34364992 gacccataaacccatagccttaaggttttgggtaagagtgtggtgtctctct 34365043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 9955982 - 9956028
Alignment:
Q  37 taaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||| |||| |||| |||||| |||||||||||||||||||||||    
T  9955982 taaaccaattgccttaaggttttgggtaagagtgtgatgtctctctt 9956028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 9956258 - 9956212
Alignment:
Q  37 taaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||| ||||||||||  ||||| |||||||||||||||||||||||    
T  9956258 taaacacattgtcttaatgttttgggtaagagtgtgatgtctctctt 9956212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 14318933 - 14318986
Alignment:
Q  30 agacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||| | |||| |||| |||||| |||||||||||| ||||||||||    
T  14318933 agacccataaatctattgccttaaggttttgggtaagagtgtggtgtctctctt 14318986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 34364580 - 34364625
Alignment:
Q  37 taaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||| | |||| |||||| ||||||||||||||||||||||    
T  34364580 taaacccatagccttaaggttttgggtaagagtgtgatgtctctct 34364625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 37556181 - 37556230
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| | |||| |||||| |||||||||||| ||||||||||    
T  37556181 ccataaacccatagccttaaggttttgggtaagagtgtggtgtctctctt 37556230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 41759553 - 41759602
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||| |||||| |||| |||||| |||||||||||| ||||||||||    
T  41759553 ccataaatccattgccttaaggttttgggtaagagtgtggtgtctctctt 41759602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 50051776 - 50051727
Alignment:
Q  34 ccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||| ||||| ||||||  ||||||||||| ||||||||||    
T  50051776 ccataaacccattatcttaaggttttgcgtaagagtgtggtgtctctctt 50051727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 3537690 - 3537638
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||| |||||||||||| |||| |||||| ||||||||||||  |||||||||    
T  3537690 gacctataaacccattggcttaaggttttgggtaagagtgtggcgtctctctt 3537638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 3550791 - 3550839
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||| ||||  ||||| |||||||||||| ||||||||||    
T  3550791 cataaacccattgccttaaagttttgggtaagagtgtggtgtctctctt 3550839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 11977351 - 11977399
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||| | || |||| |||||| |||||||||||||||||||||||    
T  11977351 cataaacctaatgccttaaggttttgggtaagagtgtgatgtctctctt 11977399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 32168789 - 32168737
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||  |||||| ||||||||||||  |||||||||    
T  32168789 gacccataaacccattgccttgaggttttgggtaagagtgtggcgtctctctt 32168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 44290549 - 44290497
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| ||||||||| || ||||| ||||    
T  44290549 gacccataaacccattgccttaaggttttgggtaagagtatggtgtctttctt 44290497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 50052114 - 50052062
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    |||||||||||| ||| |||||  ||||| |||||||||||| ||||||||||    
T  50052114 gacccataaacctattttcttaaagttttgggtaagagtgtggtgtctctctt 50052062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 1782 - 1731
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||||||||    
T  1782 gacccataaacccattgccttaaggtttttggtaagagtgtggtgtctctct 1731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 1193 - 1145
Alignment:
Q  35 cataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||| |||| |||||| ||||||||| || ||||||||||    
T  1193 cataaacccattgccttaaggttttgggtaagagtatggtgtctctctt 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 605 - 553
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||||| ||||    
T  605 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctttctt 553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 5048 - 5100
Alignment:
Q  30 agacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctct 82  Q
    |||||||||||| ||||| |||| |||||| |||||||||||| |||||||||    
T  5048 agacccataaactcattgccttatggttttgggtaagagtgtggtgtctctct 5100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 5424 - 5476
Alignment:
Q  31 gacccataaacccattgtcttagggttttaggtaagagtgtgatgtctctctt 83  Q
    ||||||||||||||||| |||| | |||| | |||||||||| ||||||||||    
T  5424 gacccataaacccattgccttaagattttggataagagtgtggtgtctctctt 5476  T

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