View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11249_low_5 (Length: 302)
Name: NF11249_low_5
Description: NF11249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11249_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 41555364 - 41555087
Alignment:
| Q |
1 |
aattgaagcttaatgaaatatattactatattgtatcatttcttttgcagtttaaccccctccccaccatggacgtaccaccaagatattttaccactgt |
100 |
Q |
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| T |
41555364 |
aattgaagcttaatgaaata-----ctatattgtatcatttcttttgcagtttaaccccctccccaccatggacgtaccaccaagatattttaccactgt |
41555270 |
T |
|
| Q |
101 |
atttgtcacatttatcttatcctttgaagttgagagatgtcaaaaaagacagnnnnnnncagttatgttggtgaaataaaaaacgaggtccctattaatt |
200 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41555269 |
atttgtcacatttatcttaacctttgaagttcagagatgtcaaaaaagacagaaaaaa-cagttatgttggtgaaataaaaaacgaggtccctattaatt |
41555171 |
T |
|
| Q |
201 |
cctaggatttggatcggctactgtgattatagtgtaaaatgagaaaattattttgacaatctcatggtttgttataaggtatct |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41555170 |
cctaggatttggatcggctactgtgattatagtgtaaaatgagaaaattattttgacaatctcatggtttgttataaggtatct |
41555087 |
T |
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