View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11249_low_6 (Length: 299)
Name: NF11249_low_6
Description: NF11249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11249_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 3294803 - 3294519
Alignment:
| Q |
1 |
cccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagtttactatttaaatgataataaaaataaagtagacttaaacata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
3294803 |
cccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagtttactatttcaatgataataaaaataaaatagacttaaacata |
3294704 |
T |
|
| Q |
101 |
gatagaataaaatatgtgtgtatacgtttaaagaaaatactaggatcttacactcattcacacccacatggatgcaaaaatgaatgaatttaacacttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
3294703 |
gatagaataaaatatgtgtgtatacgtttaaagaaaatactaggatcttacactcattcacaccgacatggatgcaaaaatgaaagaatttaacacttac |
3294604 |
T |
|
| Q |
201 |
tcatttacactaacttaaactttgcatttgagttaagggatccttacaacgacaattctctatttggagattcgcaggtggtatt |
285 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3294603 |
tcatttacactaacttaaactttgcatttgagtcaagggatccttacaacgacaattctctatttggagattcgcaggtggtatt |
3294519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 28502850 - 28502999
Alignment:
| Q |
1 |
cccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagtttactatttaaatgataataaaaataaagtagacttaaacata |
100 |
Q |
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||||||||| ||| ||||| |||||||||||||||||||| |||| || | ||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28502850 |
cccccttaaaaatagtttcatcctcgaaactagaagatctaaaaaaaagggtaatgtttactatttaaatgataataaaaataaagtacacttaaacata |
28502949 |
T |
|
| Q |
101 |
gatagaataaaatatgtgtgtatacgtttaaagaaaatactaggatctta |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28502950 |
gatagaataaaatatgtgtgtatacgtttaaagaaaatactaggatctta |
28502999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 51444410 - 51444547
Alignment:
| Q |
1 |
cccccttaagaattgtttcgtcctcgaaactagaagatctc-aaaataaagataaagtttactatttaaatgataataaaaataaagtagacttaaacat |
99 |
Q |
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|
||||||||| ||| |||||||| |||||||| |||||||| ||||||||| | ||||| |||||||||| | ||| ||||||||||||||||||| || |
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| T |
51444410 |
cccccttaaaaataatttcgtccccgaaactaaaagatctctaaaataaaggtcaagttcactatttaaacaagaatgaaaataaagtagacttaaatat |
51444509 |
T |
|
| Q |
100 |
agatagaataaaatatgtgtgtatacgtttaaagaaaa |
137 |
Q |
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|||||||||||||||||| | ||| ||||||||||| |
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| T |
51444510 |
agatagaataaaatatgtatacatatttttaaagaaaa |
51444547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 10531108 - 10531181
Alignment:
| Q |
82 |
taaagtagacttaaacatagatagaataaaatatgtgtgtatacgtttaaagaaaatactaggatcttacactc |
155 |
Q |
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|
||||||| |||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| |
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| T |
10531108 |
taaagtaaacttaagcatagatagaataaaatatgtatgtatatgtttaaagaaaattctaggatcttacactc |
10531181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10531057 - 10531113
Alignment:
| Q |
1 |
cccccttaagaattgtttcgtcctcgaaactagaagatctcaaaataaagataaagt |
57 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| |
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|
| T |
10531057 |
cccccttaaaaattgtttcgtcctcgaaactagaagctctcaaaataaaggtaaagt |
10531113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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