View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_high_12 (Length: 342)
Name: NF1124_high_12
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 335
Target Start/End: Complemental strand, 39487850 - 39487545
Alignment:
| Q |
30 |
ctccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatca |
129 |
Q |
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| T |
39487850 |
ctccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatca |
39487751 |
T |
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| Q |
130 |
cagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacac |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
39487750 |
cagatttagcattcatcaaactgcgccaagcatagctgggctggtagtcaatttgagcatccaaaaaacatgatctggcaaagtacatactcttgaacac |
39487651 |
T |
|
| Q |
230 |
ccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcct |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39487650 |
ccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctctgaagccaagtcctcct |
39487551 |
T |
|
| Q |
330 |
ttgctt |
335 |
Q |
| |
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|||||| |
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| T |
39487550 |
ttgctt |
39487545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 277
Target Start/End: Original strand, 5806911 - 5807160
Alignment:
| Q |
29 |
actccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatct-ccatccgagatcaat |
127 |
Q |
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|||||| ||||||||||| | | ||||||||||||||||| ||||| ||| ||||||||||||| || ||||| ||||| || | | || |||||||| |
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| T |
5806911 |
actccaaaccttgaagcttggtaactcaggaagccaagggtccttccatattctaacttgttgcccgtttccaattgaccacctgcaaaccaagatcaat |
5807010 |
T |
|
| Q |
128 |
cacagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaac |
227 |
Q |
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| T |
5807011 |
tattgattttgcattacacaagcttctccaagcataactaggctgataaccactacgtgccttcaaaaaacttgttctcggaaagtacctactcttaaac |
5807110 |
T |
|
| Q |
228 |
acccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgctt |
277 |
Q |
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|||| |||||||| |||||||| ||| ||| || ||||| |||||||| |
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| T |
5807111 |
acccatgaaaggagagagtgttcattggacatcagccgccaccattgctt |
5807160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 34 - 335
Target Start/End: Complemental strand, 46033968 - 46033668
Alignment:
| Q |
34 |
acaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacaga |
133 |
Q |
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|
||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46033968 |
acaccttgaagcttgacagttcaggaagccaaaggtctttccaaattttaactt-ttgcccattaccaatcgaccatctccatccgagatcaattacaga |
46033870 |
T |
|
| Q |
134 |
tttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccga |
233 |
Q |
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|||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46033869 |
tttagcattcatcaaactacaccaagcatagctgggctggcagccaatttgagcatccaaaaaacatgatctggcaaagtacctactcttgaacacccga |
46033770 |
T |
|
| Q |
234 |
gaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgc |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46033769 |
gaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagtgccttgttaaaatcactgaagcctctgaagccaagtcctcctttgc |
46033670 |
T |
|
| Q |
334 |
tt |
335 |
Q |
| |
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|| |
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|
| T |
46033669 |
tt |
46033668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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