View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_high_13 (Length: 341)
Name: NF1124_high_13
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 2394098 - 2394350
Alignment:
| Q |
16 |
atgagttgctagaatgagtgaatgacgtcttttaatttagagtatgttcctctatttacaaattttaaagactaaaattatctccgtttataatctcaga |
115 |
Q |
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| T |
2394098 |
atgagttgctagaatgagtgaatgacgtcttttaatttcgagtatgttcgtctatttacaaattttaaagactaaaattatctctgtttataatctcaga |
2394197 |
T |
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| Q |
116 |
gtctatcttagtggtttattggattgttcctgcaaatactatggnnnnnnnaatggtgttttgttactgcaaagtacaaacaatatgg--nnnnnnnnnn |
213 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
2394198 |
gtctatcttagtggtttattagattgttcctgcaaatactatggtttttttaatggtgttttgttactgcaaagtacaaacactatggtttttttttttt |
2394297 |
T |
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| Q |
214 |
aaatactagcatgtttttccctcataagatgagctgcttaatcagccggaatt |
266 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2394298 |
aaatactagcatgtttttccctcataagatgagctccttaatcagccggaatt |
2394350 |
T |
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