View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_high_3 (Length: 443)
Name: NF1124_high_3
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 438
Target Start/End: Original strand, 41410231 - 41410655
Alignment:
| Q |
13 |
aatatattaagtcaaggcatgtctcaaaacaaaccttgtcaagtttcactttctccacgtataccttcaggcttggttggtcaaagtcatggtttcaatt |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41410231 |
aatatattaagtcaaggcatgtcttaaaacaaaccttgtcaagtttcactttctccacgtataccttcaggcttggttggtcaaagtcatggtttcaatt |
41410330 |
T |
|
| Q |
113 |
ttctttgaattttgttcagagatacgtatacaaaaacccttgcataaaagaaagacatatacgaaaacttaaggnnnnnnnntgacgagtgatgatgtaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41410331 |
ttctttgaattttgttcagagatacgtatacaaaaacccttgcataaaagaaagacatatacgaaaacttaaggaaaaaaaatgacgagtgatgatgtaa |
41410430 |
T |
|
| Q |
213 |
tagaagttaaattaaaattaatctgaannnnnnnncaactctctcataaaaagtcgagtcttccttcttcttgttcttttttattggcctcaagtcttct |
312 |
Q |
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|||||||||||| |||| |||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41410431 |
tagaagttaaataaaaaataatctgatttttttttcaactctctcataaaa-gtcgaggcttccttcttcttgttcttttttattggcctcaagtcttct |
41410529 |
T |
|
| Q |
313 |
tctctcgtgtaccctaattaaaactaattaaaagaagagttaagaatcatttcagtacttgacaaaatatggaggtgttaaattagtccttcataataaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41410530 |
tctctcgtgtaccctaattaaaactaattaaaagaagagttaagaatcatttcagtacttgacaaaatatggagttgttaaattagtccttcataataaa |
41410629 |
T |
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| Q |
413 |
atgatcatgtttagtcggttataaat |
438 |
Q |
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|||||||||||||||||||||||||| |
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| T |
41410630 |
atgatcatgtttagtcggttataaat |
41410655 |
T |
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