View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_low_12 (Length: 430)
Name: NF1124_low_12
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 77 - 401
Target Start/End: Complemental strand, 25145606 - 25145278
Alignment:
| Q |
77 |
aaaaatttcaaatttgtcaacaaagtattaaatttgtttgtgaaaatttactaaaataaattggataattcacactttgtaaaacattataaaatacctc |
176 |
Q |
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| T |
25145606 |
aaaaatttcaaatttgtcaacaaagtattaaatttgtttgtgtaaatttactaaaataaattggataattcacactttgtcaaacattataaaatacctc |
25145507 |
T |
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| Q |
177 |
aactttatcactcatgcggttttgcacctctgcctgcatttgaaggacttcctttagctgaagagcactattcatttgcaaaatataattg----tataa |
272 |
Q |
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| T |
25145506 |
aactttatcactcatgcggttttgcacctctgcctgcatttgaaggacttcctttagctgaagagcactattcatttgcaaaatataattaattatataa |
25145407 |
T |
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| Q |
273 |
gctgtctcaaaatgagatatgaaaattattgtttaattagttttttgacttacgatatagaacagaaatttggcagtatatctgatatgcttctcttctc |
372 |
Q |
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| T |
25145406 |
gttgtctcaaaatgagatatgaaaattattgtttaattagttttttgacttacgatatagaacagaaatttggcagtatatctgatatgcttctcttctc |
25145307 |
T |
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| Q |
373 |
aatttttcctccttcataaatgattaagt |
401 |
Q |
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| T |
25145306 |
aatttttcctccttcgtaaatgattaagt |
25145278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 25145729 - 25145650
Alignment:
| Q |
9 |
agcagagaaatttggatgaagcacaaagtgtaatatgtcatatatttacttgagaaaaaagtaagattaaaaatttcaaa |
88 |
Q |
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| T |
25145729 |
agcagacaaatttggatgaagcacaaagtgtaatatgtcatatatttacttgagaaaaaagtaagattaaaaatttcaaa |
25145650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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