View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_low_14 (Length: 410)
Name: NF1124_low_14
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 22 - 309
Target Start/End: Original strand, 42214720 - 42215007
Alignment:
| Q |
22 |
gatgaacaaaaaggtgatgatgattttgattcaagcattgttttggacaaagagtgtgcaattgagacattggtggggctcaaggaatttgatggacatg |
121 |
Q |
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| T |
42214720 |
gatgaacaaaaaggtgatgatgattttgattcaagcattgttttggacaaagagtgtgcaattgagacattggtggggctcaaggaatttgatggacatg |
42214819 |
T |
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| Q |
122 |
agggacttgattctgaatttattggtgatggttttatgctggaggaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgt |
221 |
Q |
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| T |
42214820 |
agggacttgattctgaatttattggtgatggttttatgctggaggaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgt |
42214919 |
T |
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| Q |
222 |
gtagagaaaacatgactgcaattacttgtgaatgatgacataacttaaaacctaattaggcctctaattattatacatgatctgcctc |
309 |
Q |
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| T |
42214920 |
gtagagaaaacatgactgcaattacttgtgaatgatgacataacttaaaacctaattaggcctctaattattatacatgatctgcctc |
42215007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 65 - 309
Target Start/End: Original strand, 42207957 - 42208201
Alignment:
| Q |
65 |
tggacaaagagtgtgcaattgagacattggtggggctcaaggaatttgatggacatgagggacttgattctgaatttattggtgatggttttatgctgga |
164 |
Q |
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| T |
42207957 |
tggacaaagagtgtgcaattgagacattggtggggctcaaggaatttgatggacatgagggacttgattctgaatttattggtgatggttttatgctgga |
42208056 |
T |
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| Q |
165 |
ggaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaatgatgacataa |
264 |
Q |
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| T |
42208057 |
ggaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaatgatgacataa |
42208156 |
T |
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| Q |
265 |
cttaaaacctaattaggcctctaattattatacatgatctgcctc |
309 |
Q |
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| T |
42208157 |
cttaaaacctaattaggcctctaattattatacatgatctgcctc |
42208201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 42207893 - 42207927
Alignment:
| Q |
22 |
gatgaacaaaaaggtgatgatgattttgattcaag |
56 |
Q |
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| T |
42207893 |
gatgaacaaaaaggtgatgaggattttgattcaag |
42207927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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