View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1124_low_15 (Length: 406)

Name: NF1124_low_15
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1124_low_15
NF1124_low_15
[»] chr4 (5 HSPs)
chr4 (1-378)||(41203283-41203643)
chr4 (6-36)||(20964467-20964497)
chr4 (6-35)||(18509747-18509776)
chr4 (1-37)||(34020938-34020974)
chr4 (6-34)||(53848239-53848267)
[»] chr1 (4 HSPs)
chr1 (6-38)||(37541291-37541323)
chr1 (6-36)||(2886075-2886105)
chr1 (6-36)||(8773142-8773172)
chr1 (13-45)||(7785418-7785450)
[»] chr8 (5 HSPs)
chr8 (6-45)||(32967450-32967489)
chr8 (6-36)||(2195372-2195402)
chr8 (6-36)||(10729093-10729123)
chr8 (6-36)||(14689864-14689894)
chr8 (6-36)||(38252611-38252641)
[»] chr7 (2 HSPs)
chr7 (1-36)||(31581617-31581652)
chr7 (6-36)||(37496570-37496600)
[»] chr6 (2 HSPs)
chr6 (1-36)||(9755308-9755343)
chr6 (1-36)||(34915979-34916014)
[»] scaffold0034 (1 HSPs)
scaffold0034 (6-36)||(97963-97993)
[»] chr3 (3 HSPs)
chr3 (6-36)||(1334948-1334978)
chr3 (6-36)||(38600978-38601008)
chr3 (1-38)||(32023268-32023305)
[»] chr2 (6 HSPs)
chr2 (6-36)||(314339-314369)
chr2 (6-36)||(2427261-2427291)
chr2 (6-36)||(13221973-13222003)
chr2 (6-36)||(20696954-20696984)
chr2 (6-35)||(40964958-40964987)
chr2 (1-45)||(43077895-43077939)
[»] chr5 (2 HSPs)
chr5 (7-36)||(4044652-4044681)
chr5 (1-45)||(25814255-25814299)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 41203643 - 41203283
Alignment:
Q  1 ttttctttttgcaaatgactcagttattatggga-cgaatgtagtagnnnnnnnnataaattttataaaacttgtaaagtgatcggtatataaacttttt 99  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  41203643 ttttttttttgcaaatgactcagttattatgggaacggatgtagtagttttttt-ataaattttataaaacttgtaaagtgatcggtatataaacttttt 41203545  T
Q  100 caatccgtatctcttttcaacgtgaacttgattttttccaataataagttaatgtcgaccattttgcaagttaacaaattactgatgtccaagacttata 199  Q
    |||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  41203544 caa-----------------cgtgaacttgattttttccaataataagttaatgtcgaccattttgcaagttaacgaattactgatgtccaagacttaca 41203462  T
Q  200 agttctgtataggacataattgtagtaatacgccacacaataatttaatgttagaagttatggaacacaagtgtttctttgctaaattttgcagatgaat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41203461 agttctgtataggacataattgtagtaatacgccacacaataatttaatgttagaagttatggaacacaagtgtttctttgctaaattttgcagatgaat 41203362  T
Q  300 tctttaaagaagaagccgaagaatgcaggaacgccaggttgctttggcaattggaaactactaattccaagcttcttaa 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41203361 tctttaaagaagaagccgaagaatgcaggaacgccaggttgctttggcaattggaaactactaattccaagcttcttaa 41203283  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 20964467 - 20964497
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  20964467 tttttgcaaatgactcagttattatgggacg 20964497  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 18509776 - 18509747
Alignment:
Q  6 tttttgcaaatgactcagttattatgggac 35  Q
    ||||||||||||||||||||||||||||||    
T  18509776 tttttgcaaatgactcagttattatgggac 18509747  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34020974 - 34020938
Alignment:
Q  1 ttttctttttgcaaatgactcagttattatgggacga 37  Q
    |||| |||||||||||||||| |||||||||||||||    
T  34020974 ttttttttttgcaaatgactcggttattatgggacga 34020938  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 53848267 - 53848239
Alignment:
Q  6 tttttgcaaatgactcagttattatggga 34  Q
    |||||||||||||||||||||||||||||    
T  53848267 tttttgcaaatgactcagttattatggga 53848239  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 37541291 - 37541323
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacgaa 38  Q
    |||||||||||||||||||||||||||||||||    
T  37541291 tttttgcaaatgactcagttattatgggacgaa 37541323  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 2886105 - 2886075
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  2886105 tttttgcaaatgactcagttattatgggacg 2886075  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 8773172 - 8773142
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  8773172 tttttgcaaatgactcagttattatgggacg 8773142  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 7785418 - 7785450
Alignment:
Q  13 aaatgactcagttattatgggacgaatgtagta 45  Q
    |||||||||||||||||||||||||||| ||||    
T  7785418 aaatgactcagttattatgggacgaatgaagta 7785450  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 32967450 - 32967489
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacgaatgtagta 45  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  32967450 tttttgcaaatgactcagttattatgggacggatggagta 32967489  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 2195402 - 2195372
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  2195402 tttttgcaaatgactcagttattatgggacg 2195372  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 10729093 - 10729123
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  10729093 tttttgcaaatgactcagttattatgggacg 10729123  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 14689894 - 14689864
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  14689894 tttttgcaaatgactcagttattatgggacg 14689864  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 38252611 - 38252641
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  38252611 tttttgcaaatgactcagttattatgggacg 38252641  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31581617 - 31581652
Alignment:
Q  1 ttttctttttgcaaatgactcagttattatgggacg 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  31581617 ttttttttttgcaaatgactcagttattatgggacg 31581652  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 37496570 - 37496600
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  37496570 tttttgcaaatgactcagttattatgggacg 37496600  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9755308 - 9755343
Alignment:
Q  1 ttttctttttgcaaatgactcagttattatgggacg 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  9755308 ttttttttttgcaaatgactcagttattatgggacg 9755343  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34915979 - 34916014
Alignment:
Q  1 ttttctttttgcaaatgactcagttattatgggacg 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  34915979 ttttttttttgcaaatgactcagttattatgggacg 34916014  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 97993 - 97963
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  97993 tttttgcaaatgactcagttattatgggacg 97963  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 1334948 - 1334978
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  1334948 tttttgcaaatgactcagttattatgggacg 1334978  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 38600978 - 38601008
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  38600978 tttttgcaaatgactcagttattatgggacg 38601008  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32023268 - 32023305
Alignment:
Q  1 ttttctttttgcaaatgactcagttattatgggacgaa 38  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  32023268 ttttttttttgcaattgactcagttattatgggacgaa 32023305  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 314369 - 314339
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  314369 tttttgcaaatgactcagttattatgggacg 314339  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 2427291 - 2427261
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  2427291 tttttgcaaatgactcagttattatgggacg 2427261  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 13222003 - 13221973
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  13222003 tttttgcaaatgactcagttattatgggacg 13221973  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 20696954 - 20696984
Alignment:
Q  6 tttttgcaaatgactcagttattatgggacg 36  Q
    |||||||||||||||||||||||||||||||    
T  20696954 tttttgcaaatgactcagttattatgggacg 20696984  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 40964987 - 40964958
Alignment:
Q  6 tttttgcaaatgactcagttattatgggac 35  Q
    ||||||||||||||||||||||||||||||    
T  40964987 tttttgcaaatgactcagttattatgggac 40964958  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43077895 - 43077939
Alignment:
Q  1 ttttctttttgcaaatgactcagttattatgggacgaatgtagta 45  Q
    |||| |||||||||||| ||||||| |||||||||| ||||||||    
T  43077895 ttttttttttgcaaatggctcagttgttatgggacggatgtagta 43077939  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 4044652 - 4044681
Alignment:
Q  7 ttttgcaaatgactcagttattatgggacg 36  Q
    ||||||||||||||||||||||||||||||    
T  4044652 ttttgcaaatgactcagttattatgggacg 4044681  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25814299 - 25814255
Alignment:
Q  1 ttttctttttgcaaatgactcagttattatgggacgaatgtagta 45  Q
    |||| |||||||||||| |||||||||||||||||| ||| ||||    
T  25814299 ttttttttttgcaaatgtctcagttattatgggacggatggagta 25814255  T

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