View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1124_low_17 (Length: 392)
Name: NF1124_low_17
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 30 - 382
Target Start/End: Complemental strand, 39487850 - 39487498
Alignment:
| Q |
30 |
ctccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatca |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39487850 |
ctccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatca |
39487751 |
T |
|
| Q |
130 |
cagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacac |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
39487750 |
cagatttagcattcatcaaactgcgccaagcatagctgggctggtagtcaatttgagcatccaaaaaacatgatctggcaaagtacatactcttgaacac |
39487651 |
T |
|
| Q |
230 |
ccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39487650 |
ccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctctgaagccaagtcctcct |
39487551 |
T |
|
| Q |
330 |
ttgctttttgctcttcctaatcgatcccaactcatccagtgaattttcctttg |
382 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39487550 |
ttgctttttgctcttcctaaccgatcccaactcatccagtgaattttcctttg |
39487498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 379
Target Start/End: Original strand, 5806911 - 5807262
Alignment:
| Q |
29 |
actccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatct-ccatccgagatcaat |
127 |
Q |
| |
|
|||||| ||||||||||| | | ||||||||||||||||| ||||| ||| ||||||||||||| || ||||| ||||| || | | || |||||||| |
|
|
| T |
5806911 |
actccaaaccttgaagcttggtaactcaggaagccaagggtccttccatattctaacttgttgcccgtttccaattgaccacctgcaaaccaagatcaat |
5807010 |
T |
|
| Q |
128 |
cacagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaac |
227 |
Q |
| |
|
| ||||| ||||| ||| || | ||||||||| || ||||| || ||| | | || | |||||||| || ||| | ||||||||||||||| ||| |
|
|
| T |
5807011 |
tattgattttgcattacacaagcttctccaagcataactaggctgataaccactacgtgccttcaaaaaacttgttctcggaaagtacctactcttaaac |
5807110 |
T |
|
| Q |
228 |
acccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctc |
327 |
Q |
| |
|
|||| |||||||| |||||||| ||| ||| || ||||| |||||||| | || || || ||||| || || |||| |||| || || || |||| |
|
|
| T |
5807111 |
acccatgaaaggagagagtgttcattggacatcagccgccaccattgctttcataagagagctttgttgaactcgttgaatcctctaaaaccgagacctc |
5807210 |
T |
|
| Q |
328 |
ctttgctttttgctcttcctaatcgatcccaactcatccagtgaattttcct |
379 |
Q |
| |
|
|||| | ||||||||| |||||| |||||||| ||||| ||||||||||| |
|
|
| T |
5807211 |
cttttccttttgctctccctaatttgtcccaacttatccaatgaattttcct |
5807262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 34 - 382
Target Start/End: Complemental strand, 46033968 - 46033621
Alignment:
| Q |
34 |
acaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacaga |
133 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46033968 |
acaccttgaagcttgacagttcaggaagccaaaggtctttccaaattttaactt-ttgcccattaccaatcgaccatctccatccgagatcaattacaga |
46033870 |
T |
|
| Q |
134 |
tttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccga |
233 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46033869 |
tttagcattcatcaaactacaccaagcatagctgggctggcagccaatttgagcatccaaaaaacatgatctggcaaagtacctactcttgaacacccga |
46033770 |
T |
|
| Q |
234 |
gaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46033769 |
gaaaggagggagtgttcgttgttcatgagtcgccaacattgcttccctagaagtgccttgttaaaatcactgaagcctctgaagccaagtcctcctttgc |
46033670 |
T |
|
| Q |
334 |
tttttgctcttcctaatcgatcccaactcatccagtgaattttcctttg |
382 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46033669 |
tttttgctcttcctaaccgatcccaactcatccagtgaattttcctttg |
46033621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University