View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_low_2 (Length: 775)
Name: NF1124_low_2
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 418 - 747
Target Start/End: Complemental strand, 42069883 - 42069551
Alignment:
| Q |
418 |
acacatagtacaatagggttttgtagtata----atttaaaattacagaagtacttgtcatgccaaaataaatacaagtccccataggtatggagtattt |
513 |
Q |
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| T |
42069883 |
acacataatacaataggattttgtagtatatataatttaaaattacagaagtacttgtcatgccaaaataaatacaagtccccataggtatggagtattt |
42069784 |
T |
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| Q |
514 |
ttgaacttggagagaacaatatttttcttggagcatggtatccttttatatatataatttgaaatggaattccacgcaggacaatagaattgtgtaatga |
613 |
Q |
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| T |
42069783 |
ttgaacttggagagaacaatatttttcttggagcatggtatccttttatatatataattggaaatggaattccacgcaggacaatagaattgtgtaatga |
42069684 |
T |
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| Q |
614 |
attcgtaggtagagagacatgtgaccacaactttaatttatatnnnnnnnntcattattttatagaaattccaagatccctagcaagggcagttaggttt |
713 |
Q |
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| T |
42069683 |
attcgtaggtagagagacatgtgaccacaactttaatttatat-caaaaaatcattattttatagaaattccaagatccctagcaagggcagttaggttt |
42069585 |
T |
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| Q |
714 |
atcaatcaaccacatgcaaaaagtgtctttttct |
747 |
Q |
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| T |
42069584 |
atcaatcaaccacatgcaaaaagtgtctttttct |
42069551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 85 - 301
Target Start/End: Complemental strand, 42070128 - 42069912
Alignment:
| Q |
85 |
caaaggtcactgttaatttcaaaatagagaaaccaattatcaaatccatgaagtgaaaaaagatcaattccacgaagtgaataaatattcaatttgatct |
184 |
Q |
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| T |
42070128 |
caaaggtcactgttaatttcaaaatagagaaaccaattatcaaatccatgaagtgaaaaaagataaattccacgaagtgaataaatattcaatttgatct |
42070029 |
T |
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| Q |
185 |
ttgatatcgtagacctacggaatgnnnnnnntaataatcatcgagtcgtgcaagggtttaggttttcagccataaatggagaaaacaatttaaaagtata |
284 |
Q |
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| T |
42070028 |
ttgatatcgtagaactacggaatgaaaaaaataataatcatcgagtcgtgcaagggtttaggttttcagccataaatggagaaaacaatttaaaagtata |
42069929 |
T |
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| Q |
285 |
catgttttgtattatta |
301 |
Q |
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| T |
42069928 |
catgttttgtattatta |
42069912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 351
Target Start/End: Complemental strand, 42069912 - 42069881
Alignment:
| Q |
320 |
aacgagtcatcatttttataataattttgaca |
351 |
Q |
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| T |
42069912 |
aacgagtcatcatttttataataattttgaca |
42069881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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