View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_low_21 (Length: 337)
Name: NF1124_low_21
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 37 - 320
Target Start/End: Original strand, 2263520 - 2263805
Alignment:
| Q |
37 |
tagtatcaatgttcttacttagcatgcacatgcactaaataagcttttgaaaaactcaagtattgtctattgaagtaaataggattttcaaaaagcttaa |
136 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2263520 |
tagtatgaatgttcttacttagcatgcacatgcactaaatatacttttgaaaaactcaagtattgtctattgaagtaaataagattttcaaaaagcttaa |
2263619 |
T |
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| Q |
137 |
gttat-gtcttaaataggct-ggtgatacgcctttgtcggatgatttaacctgtttctatctctaataatgatgttgaattaatatgaactgtcacatct |
234 |
Q |
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||||| |||||||||||||| ||||||| | |||||||||| || |||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
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| T |
2263620 |
gttattgtcttaaataggctaggtgataggtctttgtcggacgacttaatctgtttctatctctaatagtgatgttgaatcaatataaactgtcacatct |
2263719 |
T |
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| Q |
235 |
tcatttaacgtgtcatgtcatagtatttaacaattgaacttaatatactgttcaacgaacgaaattgctaattcgtaaaacatata |
320 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
2263720 |
tcatttaacgtgtcatgtcatagtatttaacgattgaacttaatgtaatgttcaacgaacgaaattgctaattcgtaaaacatata |
2263805 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 21324828 - 21324873
Alignment:
| Q |
204 |
tgatgttgaattaatatgaactgtcacatcttcatttaacgtgtca |
249 |
Q |
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|||||| ||||| | ||||||| ||||||||||||||||||||||| |
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| T |
21324828 |
tgatgtggaattcacatgaactatcacatcttcatttaacgtgtca |
21324873 |
T |
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