View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1124_low_22 (Length: 328)
Name: NF1124_low_22
Description: NF1124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1124_low_22 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 5 - 328
Target Start/End: Original strand, 18668160 - 18668483
Alignment:
| Q |
5 |
actttttcaagcacaagatgtgccctagagaagagcaaaagtcaacacagatacaatattaacagtaaacatgaaacagcacatcaaaggactaagccac |
104 |
Q |
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| T |
18668160 |
actttttcaagcacaagatgtactctagagaagagcaaaagtcaacaaagatacaatattaacagaaaacaagaaacagcacatcaaaggactaagccac |
18668259 |
T |
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| Q |
105 |
caattgtgatagtcaaaagcaatgttgctgaattttgccttcgaccaccagaaggagatgagcttaacacgatctaaaagttggaatgtcgggcaagcct |
204 |
Q |
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| T |
18668260 |
caattgtgatagtcaaaagcaatgttgctgaattttgccttcgaccaccagaaggagatgagcttaacacgatctaaaagttggaatgtcggacaagcct |
18668359 |
T |
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| Q |
205 |
tggtggagaaaatcttgttatttcgttcttttcaaataatccaaatgcaagcacttcaaatcataatcataaaagagcgtttcgattttgaagtaccggt |
304 |
Q |
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| T |
18668360 |
tgttagagaaaatcttgttatttcgttcttttcaaataatccaaatgcaagcacttcaaatcataatcataaaagagcgtttcgattttgaagtaccggc |
18668459 |
T |
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| Q |
305 |
taaataggcaaactaatgtaaatg |
328 |
Q |
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| T |
18668460 |
taaataggcaaactaatgtaaatg |
18668483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 166 - 328
Target Start/End: Original strand, 36389882 - 36390044
Alignment:
| Q |
166 |
gcttaacacgatctaaaagttggaatgtcgggcaagccttggtggagaaaatcttgttatttcgttcttttcaaataatccaaatgcaagcacttcaaat |
265 |
Q |
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| T |
36389882 |
gcttaacacggtctaaaatttggaaggtcgggcaagccttgttagagaaaatcatgttatttcgatcttttcaaataatccaaatgcaagcacttcaaat |
36389981 |
T |
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| Q |
266 |
cataatcataaaagagcgtttcgattttgaagtaccggttaaataggcaaactaatgtaaatg |
328 |
Q |
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| T |
36389982 |
cataattacaaaagagcatttcaattttgaagtaccgactaaataggaaaactgaagtaaatg |
36390044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 174
Target Start/End: Original strand, 36389275 - 36389364
Alignment:
| Q |
82 |
agcacatcaaaggactaagccaccaattgtgatagtcaaaagcaatgttgctgaattttgccttcgaccaccagaaggagatgagcttaacac |
174 |
Q |
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| T |
36389275 |
agcacatcaaagggctaagccaccaattgtgatagtcaaaagtaatgttgctgaattttgcttttaaccactaga---agatgagcttaacac |
36389364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 36389166 - 36389236
Alignment:
| Q |
13 |
aagcacaagatgtgccctagagaagagcaaaagtcaacacagatacaatattaacagtaaacatgaaacag |
83 |
Q |
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| T |
36389166 |
aagcacaagacataccctagagaagagcaaaagtcaacaaagatacaatattaacagtaaacaagaaacag |
36389236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 30798171 - 30798139
Alignment:
| Q |
98 |
aagccaccaattgtgatagtcaaaagcaatgtt |
130 |
Q |
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| T |
30798171 |
aagccaccaattatgatagtcaaaagcaatgtt |
30798139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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